KCC003112A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003112A_C01 KCC003112A_c01
ccttcgtgcttatGCTGAACAACAACGAGTAGCATCACCTGTGTTTCGAACTAGGATCGT
CGCAACAGTCGCCAAAAGCTTGCGCGTTGACGAGGGCGGCTAGGCCTCAAAGTATACTTG
GCAGTATGGCGCGCTTGCGCGCGAGCTTGCTGATGGCAGCGCTGCTCGGAAGCGCTGTAG
CCCTCGTAGCATCGGAGCGAGTCTTGCTGGGCAGCGACCATAAATTCAAGCCCGGAAGTG
ACATCATGCTGTATGCAAACAAAGTCGGACCCTTTCAAAACCCGACGGAAACGTACCAGT
ATTACAACTTGCCGTTCTGCCAGCCCACTGACGGCAAGGAGTATAAGACGGAATTCCTAG
GCGAGGTGCTTGAGGGCGACCGGTTGGTGACAACTCCCTACAAGCTGCAGTTCCGCACC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003112A_C01 KCC003112A_c01
         (419 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO06970.1| Putative endosomal protein [Oryza sativa (japonic...   102  9e-22
ref|NP_172919.1| endomembrane protein 70, putative [Arabidopsis ...   101  3e-21
gb|AAF63170.1|AC010657_6 T5E21.15 [Arabidopsis thaliana]              101  3e-21
pir||H86280 protein F10B6.2 [imported] - Arabidopsis thaliana gi...   101  3e-21
ref|NP_198547.2| endomembrane protein 70, putative [Arabidopsis ...   100  5e-21

>gb|AAO06970.1| Putative endosomal protein [Oryza sativa (japonica cultivar-group)]
          Length = 595

 Score =  102 bits (255), Expect = 9e-22
 Identities = 55/97 (56%), Positives = 66/97 (67%)
 Frame = +3

Query: 126 MARLRASLLMAALLGSAVALVASERVLLGSDHKFKPGSDIMLYANKVGPFQNPTETYQYY 305
           MA   A+   A L+  A AL A+  V  GSDH++K    + LYANKVGPF NP+ETY+Y+
Sbjct: 1   MASPAAAAPAALLVLLAAALAATGVVADGSDHRYKANELVPLYANKVGPFHNPSETYRYF 60

Query: 306 NLPFCQPTDGKEYKTEFLGEVLEGDRLVTTPYKLQFR 416
           +LPFC P   KE K+E LGEVL GDRLV  PYKL FR
Sbjct: 61  DLPFCSPEKVKE-KSEALGEVLNGDRLVDAPYKLDFR 96

>ref|NP_172919.1| endomembrane protein 70, putative [Arabidopsis thaliana]
           gi|15450755|gb|AAK96649.1| T5E21.14/T5E21.14
           [Arabidopsis thaliana] gi|20334722|gb|AAM16222.1|
           At1g14670/T5E21.14 [Arabidopsis thaliana]
          Length = 592

 Score =  101 bits (251), Expect = 3e-21
 Identities = 51/90 (56%), Positives = 64/90 (70%)
 Frame = +3

Query: 147 LLMAALLGSAVALVASERVLLGSDHKFKPGSDIMLYANKVGPFQNPTETYQYYNLPFCQP 326
           LL+ A+L S    V S+     SDH++K G  + LYANKVGPF NP+ETY+Y++LPFC P
Sbjct: 9   LLVGAILFSGAGYVRSD----ASDHRYKEGDTVPLYANKVGPFHNPSETYRYFDLPFCIP 64

Query: 327 TDGKEYKTEFLGEVLEGDRLVTTPYKLQFR 416
            +G + K E LGEVL GDRLV+ PYKL FR
Sbjct: 65  -EGVKEKKEALGEVLNGDRLVSAPYKLNFR 93

>gb|AAF63170.1|AC010657_6 T5E21.15 [Arabidopsis thaliana]
          Length = 546

 Score =  101 bits (251), Expect = 3e-21
 Identities = 51/90 (56%), Positives = 64/90 (70%)
 Frame = +3

Query: 147 LLMAALLGSAVALVASERVLLGSDHKFKPGSDIMLYANKVGPFQNPTETYQYYNLPFCQP 326
           LL+ A+L S    V S+     SDH++K G  + LYANKVGPF NP+ETY+Y++LPFC P
Sbjct: 9   LLVGAILFSGAGYVRSD----ASDHRYKEGDTVPLYANKVGPFHNPSETYRYFDLPFCIP 64

Query: 327 TDGKEYKTEFLGEVLEGDRLVTTPYKLQFR 416
            +G + K E LGEVL GDRLV+ PYKL FR
Sbjct: 65  -EGVKEKKEALGEVLNGDRLVSAPYKLNFR 93

>pir||H86280 protein F10B6.2 [imported] - Arabidopsis thaliana
           gi|8778207|gb|AAF79216.1|AC006917_1 F10B6.2 [Arabidopsis
           thaliana]
          Length = 260

 Score =  101 bits (251), Expect = 3e-21
 Identities = 51/90 (56%), Positives = 64/90 (70%)
 Frame = +3

Query: 147 LLMAALLGSAVALVASERVLLGSDHKFKPGSDIMLYANKVGPFQNPTETYQYYNLPFCQP 326
           LL+ A+L S    V S+     SDH++K G  + LYANKVGPF NP+ETY+Y++LPFC P
Sbjct: 9   LLVGAILFSGAGYVRSD----ASDHRYKEGDTVPLYANKVGPFHNPSETYRYFDLPFCIP 64

Query: 327 TDGKEYKTEFLGEVLEGDRLVTTPYKLQFR 416
            +G + K E LGEVL GDRLV+ PYKL FR
Sbjct: 65  -EGVKEKKEALGEVLNGDRLVSAPYKLNFR 93

>ref|NP_198547.2| endomembrane protein 70, putative [Arabidopsis thaliana]
          Length = 564

 Score =  100 bits (249), Expect = 5e-21
 Identities = 52/90 (57%), Positives = 64/90 (70%)
 Frame = +3

Query: 144 SLLMAALLGSAVALVASERVLLGSDHKFKPGSDIMLYANKVGPFQNPTETYQYYNLPFCQ 323
           SLL+  L    V+ V S+    GSDH++K G D+ LYANKVGPF NP+ETY+Y++LPFC 
Sbjct: 9   SLLLVFLFLYGVSPVISD----GSDHRYKVGDDVPLYANKVGPFHNPSETYRYFDLPFCS 64

Query: 324 PTDGKEYKTEFLGEVLEGDRLVTTPYKLQF 413
               KE K E LGEVL GDRLV+ PYKL+F
Sbjct: 65  SAPVKE-KKEALGEVLNGDRLVSAPYKLEF 93



EST assemble image


clone accession position
1 LCL016b06_r AV626829 1 308
2 MXL034d09_r BP095013 14 419




Chlamydomonas reinhardtii
Kazusa DNA Research Institute