Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003104A_C01 KCC003104A_c01
(688 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E85436 RNA-binding like protein [imported] - Arabidopsis th... 77 3e-13
ref|NP_568011.1| RNA recognition motif (RRM)-containing protein ... 77 3e-13
pir||S56750 single stranded D box binding factor 2 - chicken 75 9e-13
pir||S56751 single stranded D box binding factor 1 - chicken gi|... 75 9e-13
dbj|BAC87637.1| unnamed protein product [Homo sapiens] 70 2e-11
>pir||E85436 RNA-binding like protein [imported] - Arabidopsis thaliana
gi|4006877|emb|CAB16795.1| RNA-binding like protein
[Arabidopsis thaliana] gi|7270645|emb|CAB80362.1|
RNA-binding like protein [Arabidopsis thaliana]
Length = 306
Score = 76.6 bits (187), Expect = 3e-13
Identities = 48/138 (34%), Positives = 69/138 (49%), Gaps = 7/138 (5%)
Frame = +1
Query: 208 SAAGRRSLDSTLKRLENPAIAKARAGP-------RIFIGKLTKDTSEADVKDYFMRFGYV 366
SAA R + +NPA R P +IF+G+L ++ S D++DYF RFG++
Sbjct: 151 SAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHI 210
Query: 367 MDVYLPKAKDNKAEHRGFGFVTFETDAAIQRVVSHGQHRLKGSTIAIDIAMPKVEDGEMN 546
D Y+PK ++ HRGFGFVTF + R V+ H + G +AID A P E G
Sbjct: 211 QDAYIPK-DPKRSGHRGFGFVTFAENGVADR-VARRSHEICGQEVAIDSATPLDEAGPSA 268
Query: 547 LDGTGLDGAAAAGLSGFG 600
+ L + G+G
Sbjct: 269 GASSMLSSSRPEYFGGYG 286
>ref|NP_568011.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana] gi|15081787|gb|AAK82548.1| AT4g36960/C7A10_400
[Arabidopsis thaliana] gi|23308345|gb|AAN18142.1|
At4g36960/C7A10_400 [Arabidopsis thaliana]
Length = 379
Score = 76.6 bits (187), Expect = 3e-13
Identities = 48/138 (34%), Positives = 69/138 (49%), Gaps = 7/138 (5%)
Frame = +1
Query: 208 SAAGRRSLDSTLKRLENPAIAKARAGP-------RIFIGKLTKDTSEADVKDYFMRFGYV 366
SAA R + +NPA R P +IF+G+L ++ S D++DYF RFG++
Sbjct: 207 SAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHI 266
Query: 367 MDVYLPKAKDNKAEHRGFGFVTFETDAAIQRVVSHGQHRLKGSTIAIDIAMPKVEDGEMN 546
D Y+PK ++ HRGFGFVTF + R V+ H + G +AID A P E G
Sbjct: 267 QDAYIPK-DPKRSGHRGFGFVTFAENGVADR-VARRSHEICGQEVAIDSATPLDEAGPSA 324
Query: 547 LDGTGLDGAAAAGLSGFG 600
+ L + G+G
Sbjct: 325 GASSMLSSSRPEYFGGYG 342
Score = 70.1 bits (170), Expect = 3e-11
Identities = 35/106 (33%), Positives = 63/106 (59%)
Frame = +1
Query: 217 GRRSLDSTLKRLENPAIAKARAGPRIFIGKLTKDTSEADVKDYFMRFGYVMDVYLPKAKD 396
G R L+ + + A+ RIF+ ++ SE+D + +F R+G + D+Y+PK +
Sbjct: 68 GNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYN 127
Query: 397 NKAEHRGFGFVTFETDAAIQRVVSHGQHRLKGSTIAIDIAMPKVED 534
+K +HRG GF+TF + +++ ++ H L G+T+A+D A PK +D
Sbjct: 128 SK-QHRGIGFITFSSADSVEDLM-EDTHDLGGTTVAVDRATPKEDD 171
Score = 38.1 bits (87), Expect = 0.13
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 316 DTSEADVKDYFMRFGYVMDVYLPKAKDNKAEHRGFGFVTFETDAAIQRVVSHGQHRLKGS 495
D +KDY +FG + D + K + RGFG+VTF + + + G+H L
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRST-GRSRGFGYVTFASAEDAKNALK-GEHFLGNR 70
Query: 496 TIAIDIAMPKVE 531
+ + +A PK E
Sbjct: 71 ILEVKVATPKEE 82
>pir||S56750 single stranded D box binding factor 2 - chicken
Length = 353
Score = 75.1 bits (183), Expect = 9e-13
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 6/191 (3%)
Frame = +1
Query: 22 ELTAATSLLSNG--LASKAAAVAAAGHGGLSGISGQTMLQDLNTLGAAAAVQQMMQAAAS 195
+L AA NG A + A GG S GAA A AA+
Sbjct: 7 QLAAAAGATQNGHEAAESSGEQQQADTGGAPAASA----------GAATAAAATAGTAAA 56
Query: 196 ASAASAAGRRSLDSTLKRLENPAIAKAR----AGPRIFIGKLTKDTSEADVKDYFMRFGY 363
A A AAG + ++ E I ++ AG ++F+G L+ DTS+ D+KDYF +FG
Sbjct: 57 AGAGPAAGTAGVAASQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGE 115
Query: 364 VMDVYLPKAKDNKAEHRGFGFVTFETDAAIQRVVSHGQHRLKGSTIAIDIAMPKVEDGEM 543
V D + K N RGFGF+ F+ ++++V+ +HRL G I AM +D
Sbjct: 116 VTDCTI-KMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVK 174
Query: 544 NLDGTGLDGAA 576
+ GL+ A
Sbjct: 175 KIFVGGLNPEA 185
Score = 55.5 bits (132), Expect = 8e-07
Identities = 34/106 (32%), Positives = 53/106 (49%), Gaps = 2/106 (1%)
Frame = +1
Query: 289 RIFIGKLTKDTSEADVKDYFMRFGYVMDVYLPK-AKDNKAEHRGFGFVTFETDAAIQRVV 465
+IF+G L + +E +++YF FG + + LP K NK RGF F+TF+ + +++V+
Sbjct: 175 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNK--RRGFVFITFKEEDPVKKVL 232
Query: 466 SHGQHRLKGSTIAIDIAMPK-VEDGEMNLDGTGLDGAAAAGLSGFG 600
H + GS I +A PK V + G G G G G
Sbjct: 233 EKKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRGSYGGRGRGGRG 278
>pir||S56751 single stranded D box binding factor 1 - chicken
gi|515838|emb|CAA56586.1| single stranded D box binding
factor [Gallus gallus]
Length = 302
Score = 75.1 bits (183), Expect = 9e-13
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 6/191 (3%)
Frame = +1
Query: 22 ELTAATSLLSNG--LASKAAAVAAAGHGGLSGISGQTMLQDLNTLGAAAAVQQMMQAAAS 195
+L AA NG A + A GG S GAA A AA+
Sbjct: 7 QLAAAAGATQNGHEAAESSGEQQQADTGGAPAASA----------GAATAAAATAGTAAA 56
Query: 196 ASAASAAGRRSLDSTLKRLENPAIAKAR----AGPRIFIGKLTKDTSEADVKDYFMRFGY 363
A A AAG + ++ E I ++ AG ++F+G L+ DTS+ D+KDYF +FG
Sbjct: 57 AGAGPAAGTAGVAASQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGE 115
Query: 364 VMDVYLPKAKDNKAEHRGFGFVTFETDAAIQRVVSHGQHRLKGSTIAIDIAMPKVEDGEM 543
V D + K N RGFGF+ F+ ++++V+ +HRL G I AM +D
Sbjct: 116 VTDCTI-KMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVK 174
Query: 544 NLDGTGLDGAA 576
+ GL+ A
Sbjct: 175 KIFVGGLNPEA 185
Score = 55.5 bits (132), Expect = 8e-07
Identities = 34/106 (32%), Positives = 53/106 (49%), Gaps = 2/106 (1%)
Frame = +1
Query: 289 RIFIGKLTKDTSEADVKDYFMRFGYVMDVYLPK-AKDNKAEHRGFGFVTFETDAAIQRVV 465
+IF+G L + +E +++YF FG + + LP K NK RGF F+TF+ + +++V+
Sbjct: 175 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNK--RRGFVFITFKEEDPVKKVL 232
Query: 466 SHGQHRLKGSTIAIDIAMPK-VEDGEMNLDGTGLDGAAAAGLSGFG 600
H + GS I +A PK V + G G G G G
Sbjct: 233 EKKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRGSYGGRGRGGRG 278
>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
Length = 286
Score = 70.5 bits (171), Expect = 2e-11
Identities = 65/173 (37%), Positives = 73/173 (41%), Gaps = 11/173 (6%)
Frame = +2
Query: 32 PPPRCSPTASPPRPPPWRLPATAACLASPAR-PCCRT*TRWARRRRCSR*CRPPPPPRRP 208
PP R PTASP R PP PA ASPAR P + TR R R P R P
Sbjct: 89 PPTRTPPTASPARTPPTESPARTPPTASPARTPPRASPTRTPPRASPRRTPSTASPTRTP 148
Query: 209 LLPGAARWTARSSGWRTPP--LPKRAPARASSSAS*PR---TRRRP---T*RTTSCASAT 364
R R+S RTPP PKR P RAS + PR TR P RT AS T
Sbjct: 149 PRASPRRTPPRASPTRTPPRASPKRTPPRASPRRTPPRASPTRAPPRASPKRTPPTASPT 208
Query: 365 *WTSTCPRPRTTRQSTAASAS*RSRP--TPPSSAWSATASTGSRARRSPSTSP 517
RT + A R+ P TPP+ + + T S S R P SP
Sbjct: 209 RTPPRASPTRTPPTESPARTPPRASPTRTPPTESPARTPSRASTRRTPPRASP 261
Score = 69.3 bits (168), Expect = 5e-11
Identities = 66/196 (33%), Positives = 80/196 (40%), Gaps = 4/196 (2%)
Frame = +2
Query: 35 PPRCSPTASPPRPPPWRLPATAACLASPARPCCRT*TRWARRRRCSR*CRPPPPPRRPLL 214
PPR SPT +PPR P R P A+ +P R TR R +R PP R P
Sbjct: 40 PPRASPTRTPPRASPRRTPPRASPRRTPPRASL---TRPPTRAPPTRMPPTAPPTRTPPT 96
Query: 215 PGAARWTARSSGWRTPPL--PKRAPARASSSAS*PRTRRRPT*RTTSCASAT*WTSTCPR 388
AR S RTPP P R P RAS + + PR R RT S AS T
Sbjct: 97 ASPARTPPTESPARTPPTASPARTPPRASPTRTPPRASPR---RTPSTASPTRTPPRASP 153
Query: 389 PRTTRQSTAASAS*RSRP--TPPSSAWSATASTGSRARRSPSTSPCPRWRTAR*TWTALA 562
RT +++ R+ P TPP ++ T S R P SP TA T T
Sbjct: 154 RRTPPRASPTRTPPRASPKRTPPRASPRRTPPRASPTRAPPRASPKRTPPTASPTRTPPR 213
Query: 563 WTAPPPPACLASARCP 610
+ P + AR P
Sbjct: 214 ASPTRTPPTESPARTP 229
Score = 68.2 bits (165), Expect = 1e-10
Identities = 76/227 (33%), Positives = 90/227 (39%), Gaps = 13/227 (5%)
Frame = +2
Query: 2 AASTA*ASSPPPPRCSPTASPPRPPPWRLPATAACLASPAR-PCCRT*TRWARRRRCSR* 178
A+ T + PP R PTA P R PP PA SPAR P + R R +R
Sbjct: 70 ASLTRPPTRAPPTRMPPTAPPTRTPPTASPARTPPTESPARTPPTASPARTPPRASPTRT 129
Query: 179 CRPPPPPRRPLLPGAARWTARSSGWRTPP--LPKRAPARASSSAS*PRTRRRPT*RTTSC 352
P R P R R+S RTPP P R P RAS + PR R RT
Sbjct: 130 PPRASPRRTPSTASPTRTPPRASPRRTPPRASPTRTPPRASPKRTPPRASPR---RTPPR 186
Query: 353 ASAT*WTSTCPRPRTTRQSTAASAS*RSRPTPPSSAWSATASTGSRARRSPSTSPC---P 523
AS T P PR + + T +AS TPP ++ + T T S AR P SP P
Sbjct: 187 ASPT----RAP-PRASPKRTPPTAS--PTRTPPRASPTRTPPTESPARTPPRASPTRTPP 239
Query: 524 RWRTAR*TWTALAWTAPP-------PPACLASARCPTCWCSACKRRR 643
AR A PP PP PT ++C R R
Sbjct: 240 TESPARTPSRASTRRTPPRASPTRTPPRASPKRTPPTASPTSCIRHR 286
Score = 38.1 bits (87), Expect = 0.13
Identities = 59/208 (28%), Positives = 70/208 (33%), Gaps = 1/208 (0%)
Frame = -1
Query: 682 RRTKAQAHKA-PTTAAALTCAAPACWAARRSQTGRRRRRRPGQCRPGSSRRPPPWAWRCR 506
RRT +A P T A T P R T R P + S R PP A R
Sbjct: 64 RRTPPRASLTRPPTRAPPTRMPPTAPPTRTPPTASPARTPPTE----SPARTPPTASPAR 119
Query: 505 WRSSSP*AGAGRG*PRAGWRRRSRTSRSRSRGALPCCPWPWAGRRPSRSRSA*SSPSRRP 326
+ P A R PRA RR T A P P A R + R+ SP+R P
Sbjct: 120 ---TPPRASPTRTPPRASPRRTPST-------ASPTRTPPRASPRRTPPRA---SPTRTP 166
Query: 325 PTCPWSACR*RCAGRRALWQWRGSPAA*ACCPASGARQQRPPRRRRRPASSAAPPPPRPA 146
P R + RR P + + PPR + PP P
Sbjct: 167 PRASPKRTPPRASPRRT--------------PPRASPTRAPPRA----SPKRTPPTASPT 208
Query: 145 CSGPAAWSGRRCQTGRRGRQPPRRRPWR 62
+ P A R T R PPR P R
Sbjct: 209 RTPPRASPTRTPPTESPARTPPRASPTR 236
