KCC003089A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003089A_C01 KCC003089A_c01
gcgcgcccaggcccagcgactcctgcctgcccgcgagcgcggcggagcttcgtgagcctg
tgacgagcacgattggccggTCGACATCGCCGTTCGACGCGGAGAGGCCGTCGTGTCCGC
ACCTTCCGGCGATGGGGCACCTAACCCCGCACCAGGCCCCGGCGGGCCTCGCCCCGACGT
GGGGTGAGAGCAGCTTCGGCATCCATGGCTTGGCGGGCGGCGAGTGCGGCGGCGGCTCGA
TGTGGGACTGTGAGCCAGTCGCGCCGGCGGGGCCCTCGGCCGAGGGCTTAGACGCCCTGT
CCTTTGCCTTCATGCAGTCGCAGCAGCCGCACGACCAGCTCATCAGCCGGCCGGGCCTGT
CCGTGACGGAGCACCCCTGCACGCTGCTGCGGGCGCCCTCCGGCGGCTACAGCCTCATCA
ACACCGCCTCCATTGCCGCCGCCGCGCCGCTCGACGCCGCGGCGGTGATCCTGCCGCAGC
CA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003089A_C01 KCC003089A_c01
         (482 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAC82365.1| unknown [Myxococcus xanthus]                            54  1e-06
ref|XP_310724.1| ENSANGP00000010257 [Anopheles gambiae] gi|21294...    54  1e-06
gb|AAA47469.1| ORF3                                                    47  1e-04
ref|XP_208618.1| hypothetical protein XP_208618 [Homo sapiens]         47  2e-04
ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         46  3e-04

>gb|AAC82365.1| unknown [Myxococcus xanthus]
          Length = 542

 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 41/121 (33%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
 Frame = +1

Query: 148 RTRPRRASPRRGVRAASASMAWRAASAA-AARCGTVSQSRRRG--PRPRA*TPCPLPSCS 318
           R RP   +P  G    +A  +  A+      RCG+       G  P P + +P P P+ S
Sbjct: 129 RARPSAPAPSAGRTCPTAGPSSCASGCCPTGRCGSAPGPTPHGAEPSPPSQSPSPAPASS 188

Query: 319 RSSRTT------SSSAGRACP*RSTPARCCGRPPAATASSTPPPL----PPPRRS--TPR 462
              R T      +S+AG   P    P RCCGRP    A + PP      PPP RS  TP 
Sbjct: 189 GGRRRTHPRPARASAAGATAPACLPPPRCCGRPGTGCARTAPPSTSASHPPPPRSPGTPP 248

Query: 463 R 465
           R
Sbjct: 249 R 249

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 44/138 (31%), Positives = 51/138 (36%), Gaps = 31/138 (22%)
 Frame = +1

Query: 145 PRTRPRRASPRRGVRAAS-ASMAWRAASAAAARCGTVSQSRRRGPR-------------- 279
           PR  PR   PRR  R +   S     A  +  RC   S+  RR P               
Sbjct: 56  PRAPPRSPPPRRRHRGSRHRSFRPTCARRSGRRCPAPSRHARRNPAGPSRRCGPPRKSTP 115

Query: 280 PRA*TPCPLPS-CSRSSRTTSSSAGRACP*RSTPARC---------CGRPPAAT---ASS 420
            R  TPCP P  C       + SAGR CP  + P+ C         CG  P  T   A  
Sbjct: 116 TRCCTPCPAPPRCRARPSAPAPSAGRTCP-TAGPSSCASGCCPTGRCGSAPGPTPHGAEP 174

Query: 421 TPP---PLPPPRRSTPRR 465
           +PP   P P P  S  RR
Sbjct: 175 SPPSQSPSPAPASSGGRR 192

 Score = 37.4 bits (85), Expect = 0.094
 Identities = 43/150 (28%), Positives = 56/150 (36%), Gaps = 3/150 (2%)
 Frame = -3

Query: 468 SPPRRRAARRRQWRRC**GCSRRRAPAAACRGAPSRTGPAG**AGRAAAATA*RQRTGRL 289
           SPP RR  R  + R     C+RR           +R  PAG    R          T   
Sbjct: 62  SPPPRRRHRGSRHRSFRPTCARRSGRRCPAPSRHARRNPAG--PSRRCGPPRKSTPTRCC 119

Query: 288 SPRPRAPPARLAHSPTSSRRRTRRPPSHGCRSCSHPTSGRGPPGPGAGLGAPSPEGAD-- 115
           +P P APP   A     +    R  P+ G  SC+   SG  P G       P+P GA+  
Sbjct: 120 TPCP-APPRCRARPSAPAPSAGRTCPTAGPSSCA---SGCCPTGRCGSAPGPTPHGAEPS 175

Query: 114 -TTASPRRTAMSTGQSCSSQAHEAPPRSRA 28
             + SP     S+G     + H  P R+ A
Sbjct: 176 PPSQSPSPAPASSGG--RRRTHPRPARASA 203

 Score = 37.4 bits (85), Expect = 0.094
 Identities = 41/134 (30%), Positives = 52/134 (38%)
 Frame = -3

Query: 408 SRRRAPAAACRGAPSRTGPAG**AGRAAAATA*RQRTGRLSPRPRAPPARLAHSPTSSRR 229
           S+  +PA A  G   RT P      RA+AA       G  +P    PP R    P +   
Sbjct: 178 SQSPSPAPASSGGRRRTHPR---PARASAA-------GATAPAC-LPPPRCCGRPGTGCA 226

Query: 228 RTRRPPSHGCRSCSHPTSGRGPPGPGAGLGAPSPEGADTTASPRRTAMSTGQSCSSQAHE 49
           RT  PPS    S SHP   R P  P    G+P+   A  + + R     T  +  + A  
Sbjct: 227 RTA-PPS---TSASHPPPPRSPGTPPRASGSPAAAPAPPSPACRPPPPGTTPAPRNAALP 282

Query: 48  APPRSRAGRSRWAW 7
           A P     R R  W
Sbjct: 283 ALPCISPSRQRATW 296

>ref|XP_310724.1| ENSANGP00000010257 [Anopheles gambiae] gi|21294553|gb|EAA06698.1|
           ENSANGP00000010257 [Anopheles gambiae str. PEST]
          Length = 139

 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 38/101 (37%), Positives = 47/101 (45%)
 Frame = +1

Query: 145 PRTRPRRASPRRGVRAASASMAWRAASAAAARCGTVSQSRRRGPRPRA*TPCPLPSCSRS 324
           P  RP  A+PR G  AAS         +A+ R  +  + R   P  R+  P P P+   S
Sbjct: 5   PSRRPSPANPRSGGPAASCPRR-----SASRRATSTKRPRSGRPPARSPPPPPPPTTPPS 59

Query: 325 SRTTSSSAGRACP*RSTPARCCGRPPAATASSTPPPLPPPR 447
            R  +  AGRA P RSTP        A TA S+ PP P PR
Sbjct: 60  GRRRAGRAGRAAPPRSTPRAA----TAPTAGSSRPPCPRPR 96

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 48/153 (31%), Positives = 57/153 (36%), Gaps = 11/153 (7%)
 Frame = +1

Query: 4   RPGPATP-------ACPRARRSFVSL*RARLAGRHRRSTRRGRRVRTFRRWGT*PRTRPR 162
           RP PA P       +CPR           R A R   ST+R R  R   R    P   P 
Sbjct: 8   RPSPANPRSGGPAASCPR-----------RSASRRATSTKRPRSGRPPARS---PPPPPP 53

Query: 163 RASPRRGVRAASASMAWRAA----SAAAARCGTVSQSRRRGPRPRA*TPCPLPSCSRSSR 330
             +P  G R A    A RAA    +  AA   T   SR   PRPR          ++ + 
Sbjct: 54  PTTPPSGRRRAGR--AGRAAPPRSTPRAATAPTAGSSRPPCPRPR----------TKMTS 101

Query: 331 TTSSSAGRACP*RSTPARCCGRPPAATASSTPP 429
             SS+  R  P    PA  C RPP  +    PP
Sbjct: 102 ARSSATARTLP----PAPTC-RPPGPSTLLPPP 129

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 39/133 (29%), Positives = 49/133 (36%)
 Frame = -3

Query: 474 AGSPPRRRAARRRQWRRC**GCSRRRAPAAACRGAPSRTGPAG**AGRAAAATA*RQRTG 295
           A S PRR A+RR           R R+     R  P    P    +GR  A      R G
Sbjct: 20  AASCPRRSASRRAT------STKRPRSGRPPARSPPPPPPPTTPPSGRRRAG-----RAG 68

Query: 294 RLSPRPRAPPARLAHSPTSSRRRTRRPPSHGCRSCSHPTSGRGPPGPGAGLGAPSPEGAD 115
           R +P    P A  A +  SSR    RP +    + S  T+   PP P        P G  
Sbjct: 69  RAAPPRSTPRAATAPTAGSSRPPCPRPRTKMTSARSSATARTLPPAPTC-----RPPGPS 123

Query: 114 TTASPRRTAMSTG 76
           T   P  +  +TG
Sbjct: 124 TLLPPPTSCGTTG 136

 Score = 30.8 bits (68), Expect = 8.8
 Identities = 29/73 (39%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
 Frame = +1

Query: 259 SRRRGP-RPRA*TP---CPLPSCSRSSRTTSSSAGRACP*RSTPARCCGRPPAATASSTP 426
           SRR  P  PR+  P   CP  S SR  R TS+   R+           GRPPA    S P
Sbjct: 6   SRRPSPANPRSGGPAASCPRRSASR--RATSTKRPRS-----------GRPPAR---SPP 49

Query: 427 PPLPPPRRSTPRR 465
           PP PP    + RR
Sbjct: 50  PPPPPTTPPSGRR 62

>gb|AAA47469.1| ORF3
          Length = 142

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 50/139 (35%), Positives = 60/139 (42%), Gaps = 23/139 (16%)
 Frame = -3

Query: 366 SRTGPAG**AGRAAAATA*RQRTGRLSPRPRAPP-ARLAHSPTSSRRRTRRPPS------ 208
           SR GP    +GR A   +    + R S RP   P A  A +P S R RTRRPPS      
Sbjct: 6   SRPGPVRP-SGRVAGTGS---VSARASARPPVGPCAGSAWAPASGRPRTRRPPSDPPCAP 61

Query: 207 HGCRSCSHPTSGRGP----------------PGPGAGLGAPSPEGADTTASPRRTAMSTG 76
              R  S P  G+ P                PG  +GL + S   A +TA   +TA   G
Sbjct: 62  RCSRRPSLPRRGKTPQSQSVPRTRTCRYSSHPGGSSGLASAS---AASTAPICQTAYRRG 118

Query: 75  QSCSSQAHEAPPRSRAGRS 19
           + C  Q   A PRSRAG S
Sbjct: 119 RGCLPQTWGAWPRSRAGGS 137

>ref|XP_208618.1| hypothetical protein XP_208618 [Homo sapiens]
          Length = 244

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 49/150 (32%), Positives = 59/150 (38%), Gaps = 17/150 (11%)
 Frame = -3

Query: 414 GCSRRRAPAAACRGAPSRTGPAG**AGRAA-AATA*RQRTG---RLSPR-PRAPPARLAH 250
           G   R+  A A  GA  R+   G    R A AA+  RQRT    R SPR PR P  R A 
Sbjct: 37  GHGHRQETATAWSGAGERSAGQGPTCPRCARAASRGRQRTTSGPRRSPRRPRCPAPRRAD 96

Query: 249 SPTSSRRRTRRPPSHGCRSCSHPTSGRGPPGPGAGL------------GAPSPEGADTTA 106
            P+        P     R    P     PPGP   L            G   P G  TT+
Sbjct: 97  PPSPRSDAPAPPRGRSLRVLPLPQVQAEPPGPWPALPAAPKPLASPEAGMAGPGGRRTTS 156

Query: 105 SPRRTAMSTGQSCSSQAHEAPPRSRAGRSR 16
            P+R     G     +AH +P  +R GR+R
Sbjct: 157 LPKR--RGCGSCWRGEAH-SPRTARTGRTR 183

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 43/128 (33%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
 Frame = +1

Query: 88  RRSTRRGRRVRTFRRWGT*PRTRPRRASPRRGVRAASASMAWRAASAAAA--RCGTVSQS 261
           RR+  R    RT  R    PR  P RASPRR    AS + A   AS      R       
Sbjct: 118 RRTPPRASPTRTPPRAS--PRRTPPRASPRRTPPRASPTRAPPRASPKRTPPRASPTRTP 175

Query: 262 RRRGPR--PRA*TPCPLPSCSRSSRTTSSSAGRACP*RSTPARCCGRPPAATASSTPPPL 435
            R  P   P   +P   P  +  +RT S ++ R  P R++P R    PP A+ + TPP  
Sbjct: 176 PRASPTRTPPTESPARTPPTASPARTPSRASPRRMPPRASPTRT---PPRASPTRTPPRA 232

Query: 436 PPPRRSTP 459
            P +R+ P
Sbjct: 233 SP-KRTPP 239

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 39/123 (31%), Positives = 53/123 (42%), Gaps = 14/123 (11%)
 Frame = +1

Query: 139 T*PRTRPRRASPRRGVRAA-----------SASMAWRAASAAAARCGTVSQSRRRGPRPR 285
           T PR  PRRA PR   R             + S A    +A+ AR  + +  RR  PR  
Sbjct: 66  TPPRASPRRAPPRASPRRTPPTASPTRTPPTESPARTPPTASPARTPSRASPRRTPPRA- 124

Query: 286 A*TPCPLPSCSRSSRTTSSSAGRACP*RSTPARCCGRPPAATASSTPP---PLPPPRRST 456
             +P   P  +   RT   ++ R  P R++P R    PP A+   TPP   P   P R++
Sbjct: 125 --SPTRTPPRASPRRTPPRASPRRTPPRASPTRA---PPRASPKRTPPRASPTRTPPRAS 179

Query: 457 PRR 465
           P R
Sbjct: 180 PTR 182

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 39/110 (35%), Positives = 51/110 (45%), Gaps = 3/110 (2%)
 Frame = +1

Query: 145 PRTRPRRASPRRGVRAASASMAWRAASAAAARCGTVSQSRRRGPRPRA*TPCPLPSCSRS 324
           P   P RASPRR    AS +   R    A+ R      S RR P PRA +P   P  +  
Sbjct: 108 PARTPSRASPRRTPPRASPT---RTPPRASPRRTPPRASPRRTP-PRA-SPTRAPPRASP 162

Query: 325 SRTTSSSAGRACP*RSTPARCCGRPPAATASSTPPPLPP---PRRSTPRR 465
            RT   ++    P R++P R    PP  + + TPP   P   P R++PRR
Sbjct: 163 KRTPPRASPTRTPPRASPTRT---PPTESPARTPPTASPARTPSRASPRR 209

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 35/108 (32%), Positives = 46/108 (42%)
 Frame = +1

Query: 139 T*PRTRPRRASPRRGVRAASASMAWRAASAAAARCGTVSQSRRRGPRPRA*TPCPLPSCS 318
           T PR  PRR  PR   R A    + R     A+   T          P   +P   P  +
Sbjct: 57  TPPRASPRRTPPRASPRRAPPRASPRRTPPTASPTRT----------PPTESPARTPPTA 106

Query: 319 RSSRTTSSSAGRACP*RSTPARCCGRPPAATASSTPPPLPPPRRSTPR 462
             +RT S ++ R  P R++P R    PP A+   T PP   PRR+ PR
Sbjct: 107 SPARTPSRASPRRTPPRASPTR---TPPRASPRRT-PPRASPRRTPPR 150

 Score = 40.0 bits (92), Expect = 0.015
 Identities = 38/110 (34%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = +1

Query: 145 PRTRPRRASPRRGVRAASASMAWRAASAAAARCGTVSQSRRRGPRPRA*TPCPLPSCSRS 324
           P   P RASP R    AS     R    A+ R      S RR P PRA +P   P  +  
Sbjct: 36  PARTPPRASPARTPPRASPG---RTPPRASPRRTPPRASPRRAP-PRA-SPRRTPPTASP 90

Query: 325 SRTTSSSAGRACP*RSTPARCCGRPPAATASSTPPPLPP---PRRSTPRR 465
           +RT  + +    P  ++PAR    P  A+   TPP   P   P R++PRR
Sbjct: 91  TRTPPTESPARTPPTASPART---PSRASPRRTPPRASPTRTPPRASPRR 137

 Score = 36.2 bits (82), Expect = 0.21
 Identities = 45/156 (28%), Positives = 59/156 (36%), Gaps = 6/156 (3%)
 Frame = -3

Query: 468 SPPR---RRAARRRQWRRC**GCSRRRAPAAACRGAPSRTGPAG**AGRAAAATA*RQRT 298
           +PPR   RR   R   RR     S RR P  A   +P+RT P    A     A+  R  +
Sbjct: 57  TPPRASPRRTPPRASPRRAPPRASPRRTPPTA---SPTRTPPTESPARTPPTASPARTPS 113

Query: 297 GRLSPRPRAPPARLAHSPTSSRRRTRRPPSHGCRSCSHPTSGRGPPGPGAGLGAPSPEGA 118
            R SPR   P A    +P  +  R   P +   R+    +  R PP         SP+  
Sbjct: 114 -RASPRRTPPRASPTRTPPRASPRRTPPRASPRRTPPRASPTRAPP-------RASPKRT 165

Query: 117 DTTASPRRT---AMSTGQSCSSQAHEAPPRSRAGRS 19
              ASP RT   A  T    +      PP +   R+
Sbjct: 166 PPRASPTRTPPRASPTRTPPTESPARTPPTASPART 201

 Score = 35.4 bits (80), Expect = 0.36
 Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
 Frame = +1

Query: 280 PRA*TPCPLPSCSRSSRTTSSSAGRACP*RSTPARCCGRPPAATASSTPPPLPP---PRR 450
           P   +P   P     +RT  +++    P R++PAR    PP A+   TPP   P   P R
Sbjct: 13  PPTASPARTPPTESPARTPPTASPARTPPRASPART---PPRASPGRTPPRASPRRTPPR 69

Query: 451 STPRR 465
           ++PRR
Sbjct: 70  ASPRR 74

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 38/135 (28%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
 Frame = -3

Query: 408 SRRRAPAAACRGAPSRTGPAG**AGRAAAATA*RQRTGRLSPRPRAPPARLAHSPTSSRR 229
           S RR P    R +P+RT P      RA+     R+   R SPR   P A    +P  +  
Sbjct: 116 SPRRTPP---RASPTRTPP------RASP----RRTPPRASPRRTPPRASPTRAPPRASP 162

Query: 228 RTRRPPSHGCRSCSHPTSGRGPP--GPGAGLGAPSPEGADTTASPRR---TAMSTGQSCS 64
           +   P +   R+    +  R PP   P       SP    + ASPRR    A  T     
Sbjct: 163 KRTPPRASPTRTPPRASPTRTPPTESPARTPPTASPARTPSRASPRRMPPRASPTRTPPR 222

Query: 63  SQAHEAPPRSRAGRS 19
           +     PPR+   R+
Sbjct: 223 ASPTRTPPRASPKRT 237



EST assemble image


clone accession position
1 LCL052b07_r AV629107 1 424
2 LCL010h04_r AV626539 112 482




Chlamydomonas reinhardtii
Kazusa DNA Research Institute