Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003088A_C01 KCC003088A_c01
(785 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB43085.1| RNA polymerase II [Stephanotis floribunda] 319 3e-86
emb|CAB43089.1| RNA polymerase II [Wrightia arborea] 319 3e-86
emb|CAB43081.1| RNA polymerase II [Potalia resinifera] 319 4e-86
emb|CAB43073.1| RNA polymerase II [Mussaenda erythrophylla] 318 5e-86
gb|AAC64011.1| RNA polymerase II subunit 2 [Mostuea brunonis] 318 5e-86
>emb|CAB43085.1| RNA polymerase II [Stephanotis floribunda]
Length = 261
Score = 319 bits (818), Expect = 3e-86
Identities = 150/194 (77%), Positives = 171/194 (87%)
Frame = +2
Query: 5 EAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAE 184
E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TYT EDMPFTAE
Sbjct: 31 ENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTAE 90
Query: 185 GIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTKVTVDNVSQMLHDLGY 364
GI PDIIVNPHAIPSRMTIG L+E +M KVA+ MG EGDATPFT VTVDN+S+ LH GY
Sbjct: 91 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 150
Query: 365 QRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRAR 544
Q RG+E MY+GHTGR L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+LTRQPAEGR+R
Sbjct: 151 QMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 210
Query: 545 DGGLRFGEMERDCL 586
DGGLRFGEMERDC+
Sbjct: 211 DGGLRFGEMERDCM 224
>emb|CAB43089.1| RNA polymerase II [Wrightia arborea]
Length = 249
Score = 319 bits (818), Expect = 3e-86
Identities = 150/194 (77%), Positives = 171/194 (87%)
Frame = +2
Query: 5 EAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAE 184
E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TYT EDMPFTAE
Sbjct: 18 ENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTAE 77
Query: 185 GIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTKVTVDNVSQMLHDLGY 364
GI PDIIVNPHAIPSRMTIG L+E +M KVA+ MG EGDATPFT VTVDN+S+ LH GY
Sbjct: 78 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 137
Query: 365 QRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRAR 544
Q RG+E MY+GHTGR L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+LTRQPAEGR+R
Sbjct: 138 QMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 197
Query: 545 DGGLRFGEMERDCL 586
DGGLRFGEMERDC+
Sbjct: 198 DGGLRFGEMERDCM 211
>emb|CAB43081.1| RNA polymerase II [Potalia resinifera]
Length = 249
Score = 319 bits (817), Expect = 4e-86
Identities = 149/194 (76%), Positives = 171/194 (87%)
Frame = +2
Query: 5 EAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAE 184
E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TYT EDMPFT+E
Sbjct: 31 ETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTSE 90
Query: 185 GIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTKVTVDNVSQMLHDLGY 364
GI PDIIVNPHAIPSRMTIG L+E +M KVA+ MG EGDATPFT VTVDN+S+ LH GY
Sbjct: 91 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 150
Query: 365 QRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRAR 544
Q RG+E MY+GHTGR L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+LTRQPAEGR+R
Sbjct: 151 QMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 210
Query: 545 DGGLRFGEMERDCL 586
DGGLRFGEMERDC+
Sbjct: 211 DGGLRFGEMERDCM 224
>emb|CAB43073.1| RNA polymerase II [Mussaenda erythrophylla]
Length = 261
Score = 318 bits (816), Expect = 5e-86
Identities = 149/194 (76%), Positives = 170/194 (86%)
Frame = +2
Query: 5 EAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAE 184
E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TYT EDMPFT E
Sbjct: 31 ETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVE 90
Query: 185 GIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTKVTVDNVSQMLHDLGY 364
GI PDIIVNPHAIPSRMTIG L+E +M KVA+ MG EGDATPFT VTVDN+S+ LH GY
Sbjct: 91 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 150
Query: 365 QRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRAR 544
Q RG+E MY+GHTGR L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+LTRQPAEGR+R
Sbjct: 151 QMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 210
Query: 545 DGGLRFGEMERDCL 586
DGGLRFGEMERDC+
Sbjct: 211 DGGLRFGEMERDCM 224
>gb|AAC64011.1| RNA polymerase II subunit 2 [Mostuea brunonis]
Length = 261
Score = 318 bits (816), Expect = 5e-86
Identities = 149/194 (76%), Positives = 170/194 (86%)
Frame = +2
Query: 5 EAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAE 184
E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TYT EDMPFT E
Sbjct: 25 ETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTGE 84
Query: 185 GIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTKVTVDNVSQMLHDLGY 364
GI PDIIVNPHAIPSRMTIG L+E +M KVA+ MG EGDATPFT VTVDN+S+ LH GY
Sbjct: 85 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 144
Query: 365 QRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRAR 544
Q RG+E MY+GHTGR L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+LTRQPAEGR+R
Sbjct: 145 QMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 204
Query: 545 DGGLRFGEMERDCL 586
DGGLRFGEMERDC+
Sbjct: 205 DGGLRFGEMERDCM 218
