Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003078A_C01 KCC003078A_c01
(513 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an RNA qual... 87 2e-16
ref|XP_222686.1| similar to Mus musculus 60kDa SS-A/Ro [Rattus n... 84 1e-15
gb|AAO47002.1| gastric cancer multi-drug resistance protein vari... 83 2e-15
gb|AAA35532.1| ribonucleoprotein autoantigen 60 kd subunit 83 2e-15
gb|AAB81553.1| 60-kD SS-A/Ro ribonucleoprotein [Homo sapiens] 83 2e-15
>ref|NP_505638.1| RO (Ro) ribonucleoProtein, possibly an RNA quality control
checkpoint (72.8 kD) (rop-1) [Caenorhabditis elegans]
gi|12643738|sp|Q27274|RO60_CAEEL 60-kDa SS-A/Ro
ribonucleoprotein homolog gi|7511637|pir||T19225 Ro
autoantigen 60K homolog - Caenorhabditis elegans
gi|784872|gb|AAC41575.1| Ro ribonucleoprotein
autoantigen gi|905359|gb|AAA96949.1| ribonucleoprotein
Ro autoantigen homolog gi|3874263|emb|CAA98241.1| C.
elegans ROP-1 protein (corresponding sequence C12D8.11)
[Caenorhabditis elegans] gi|3880715|emb|CAA16325.1| C.
elegans ROP-1 protein (corresponding sequence C12D8.11)
[Caenorhabditis elegans] gi|1586552|prf||2204248A 60kD
Ro autoantigen
Length = 643
Score = 86.7 bits (213), Expect = 2e-16
Identities = 42/96 (43%), Positives = 62/96 (63%)
Frame = +2
Query: 206 QSEPISADQVANNAGGFVFKVDDFTLLRRYIILGSDANNYYVSRKSVDLASAQCVVRLLA 385
Q E + QV NNAGGFVF V D T +RR++ILGSD +Y+ S + + + +AQ +++++
Sbjct: 54 QMEKVKDGQVENNAGGFVFPVSDETQVRRFLILGSDKGSYHQSSEKITIDNAQRIIKIIE 113
Query: 386 AGQGEAVVKEVVDISREGRAPKQATGIVVLAMCARL 493
G G V+KE+ I+ E R PK I LA+CAR+
Sbjct: 114 QGNGHMVLKELALINAENRNPKMNAMIFTLAICARI 149
>ref|XP_222686.1| similar to Mus musculus 60kDa SS-A/Ro [Rattus norvegicus]
Length = 538
Score = 83.6 bits (205), Expect = 1e-15
Identities = 38/107 (35%), Positives = 66/107 (61%)
Frame = +2
Query: 188 MAETVPQSEPISADQVANNAGGFVFKVDDFTLLRRYIILGSDANNYYVSRKSVDLASAQC 367
M E+ Q +P+S +QVAN+ GG+V++V D L R++ GS+ Y+ + + L +A+
Sbjct: 1 MEESANQLQPLSDNQVANSEGGYVWQVTDMNRLHRFLCFGSEGGTCYIKEQKLGLENAEA 60
Query: 368 VVRLLAAGQGEAVVKEVVDISREGRAPKQATGIVVLAMCARLGDPVT 508
++RL+ G+G V++E+ S+EGR KQ + LA+C++ D T
Sbjct: 61 LIRLIEDGRGSEVIQEIKSFSQEGRTAKQEPLLFALAICSQCADVST 107
>gb|AAO47002.1| gastric cancer multi-drug resistance protein variant [Homo sapiens]
Length = 534
Score = 82.8 bits (203), Expect = 2e-15
Identities = 36/104 (34%), Positives = 65/104 (61%)
Frame = +2
Query: 188 MAETVPQSEPISADQVANNAGGFVFKVDDFTLLRRYIILGSDANNYYVSRKSVDLASAQC 367
M E+V Q +P++ Q+AN+ G+V++V D L R++ GS+ YY+ + + L +A+
Sbjct: 1 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA 60
Query: 368 VVRLLAAGQGEAVVKEVVDISREGRAPKQATGIVVLAMCARLGD 499
++RL+ G+G V++E+ S+EGR KQ + LA+C++ D
Sbjct: 61 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSD 104
>gb|AAA35532.1| ribonucleoprotein autoantigen 60 kd subunit
Length = 525
Score = 82.8 bits (203), Expect = 2e-15
Identities = 36/104 (34%), Positives = 65/104 (61%)
Frame = +2
Query: 188 MAETVPQSEPISADQVANNAGGFVFKVDDFTLLRRYIILGSDANNYYVSRKSVDLASAQC 367
M E+V Q +P++ Q+AN+ G+V++V D L R++ GS+ YY+ + + L +A+
Sbjct: 1 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA 60
Query: 368 VVRLLAAGQGEAVVKEVVDISREGRAPKQATGIVVLAMCARLGD 499
++RL+ G+G V++E+ S+EGR KQ + LA+C++ D
Sbjct: 61 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSD 104
>gb|AAB81553.1| 60-kD SS-A/Ro ribonucleoprotein [Homo sapiens]
Length = 193
Score = 82.8 bits (203), Expect = 2e-15
Identities = 36/104 (34%), Positives = 65/104 (61%)
Frame = +2
Query: 188 MAETVPQSEPISADQVANNAGGFVFKVDDFTLLRRYIILGSDANNYYVSRKSVDLASAQC 367
M E+V Q +P++ Q+AN+ G+V++V D L R++ GS+ YY+ + + L +A+
Sbjct: 1 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA 60
Query: 368 VVRLLAAGQGEAVVKEVVDISREGRAPKQATGIVVLAMCARLGD 499
++RL+ G+G V++E+ S+EGR KQ + LA+C++ D
Sbjct: 61 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSD 104
