KCC003063A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003063A_C01 KCC003063A_c01
atacagTGATAGTTAAATGTAGATTGGTCAGGACAACCTATATTTGCAGCGCCTTAGAGA
CCCGCTTGACATAAACCAGAGAACCCTTGCGACCAAGGCGTTTGGCAAACGTGACGCTCC
CTGGCCCGGACTGTCCGCTTTCGGAAACCTCTCTTGAGCTCTTAGTTGCGTCAGCCTCGA
GCCCGGGGGCGCCAGGGCGAGCGGGCTGGGCCCCGGACTTGGCGCCGCAGCTGACAGATG
GCGGACCGCAAGCCTATCGAGCTGGCAGAAGGATGGAGCTTTATGGAGGTGGGGCATTAG
CATGTGCAGCAGAGGAGCTTGGGCGGGATCTGCATCTGCATTTCCCGGCTCACCTCGGTC
ACGTCTTGGCCCAAGCAGAAAGGCATCCAGAAGCTCATCCGCTTGCTGGAGGGAGAGCCA
GAGGACCAATTTAACGCGGAGCAGTATATGCACCTGTACACGACTATCTACAACATGTGC
ACCCAGAAGCCGCCGCACGACTATTCGGAGCAGCTGTACAGCAAGTACAGGGACGCGTTC
AACAAGTACATAAACGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003063A_C01 KCC003063A_c01
         (557 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB64732.1| cullin-like protein [Oryza sativa (japonica cult...   102  5e-21
gb|AAK53839.1|AC011806_16 Putative cullin [Oryza sativa]              102  5e-21
emb|CAC87838.1| cullin 1D [Nicotiana tabacum]                         100  1e-20
emb|CAC87836.1| cullin 1B [Nicotiana tabacum]                         100  1e-20
pir||T01092 cullin-like protein T10P11.14.1 - Arabidopsis thalia...    99  5e-20

>dbj|BAB64732.1| cullin-like protein [Oryza sativa (japonica cultivar-group)]
           gi|15528696|dbj|BAB64762.1| cullin-like protein [Oryza
           sativa (japonica cultivar-group)]
           gi|33243052|gb|AAQ01196.1| CUL1 [Oryza sativa (japonica
           cultivar-group)]
          Length = 732

 Score =  102 bits (253), Expect = 5e-21
 Identities = 51/103 (49%), Positives = 62/103 (59%)
 Frame = +1

Query: 244 DRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGEPE 423
           +RK I+L +GW FM                              QKGI KL  +LEG+PE
Sbjct: 5   ERKTIDLEQGWEFM------------------------------QKGITKLKNILEGKPE 34

Query: 424 DQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYI 552
            QF++E YM LYTTIYNMCTQKPPHDYS+QLY KYR++F +YI
Sbjct: 35  PQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYEKYRESFEEYI 77

>gb|AAK53839.1|AC011806_16 Putative cullin [Oryza sativa]
          Length = 750

 Score =  102 bits (253), Expect = 5e-21
 Identities = 51/103 (49%), Positives = 62/103 (59%)
 Frame = +1

Query: 244 DRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGEPE 423
           +RK I+L +GW FM                              QKGI KL  +LEG+PE
Sbjct: 5   ERKTIDLEQGWEFM------------------------------QKGITKLKNILEGKPE 34

Query: 424 DQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYI 552
            QF++E YM LYTTIYNMCTQKPPHDYS+QLY KYR++F +YI
Sbjct: 35  PQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYEKYRESFEEYI 77

>emb|CAC87838.1| cullin 1D [Nicotiana tabacum]
          Length = 224

 Score =  100 bits (250), Expect = 1e-20
 Identities = 52/106 (49%), Positives = 64/106 (60%)
 Frame = +1

Query: 238 MADRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGE 417
           M+  K IEL EGW FM                              QKG+ KL ++LEG+
Sbjct: 3   MSQMKIIELEEGWEFM------------------------------QKGVTKLKKILEGQ 32

Query: 418 PEDQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYIN 555
            +D FN+E+YM LYTTIYNMCTQKPPHDYS+QLY KY++AF +YIN
Sbjct: 33  -QDSFNSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYIN 77

>emb|CAC87836.1| cullin 1B [Nicotiana tabacum]
          Length = 739

 Score =  100 bits (250), Expect = 1e-20
 Identities = 52/106 (49%), Positives = 64/106 (60%)
 Frame = +1

Query: 238 MADRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGE 417
           M+  K IEL EGW FM                              QKG+ KL ++LEG+
Sbjct: 3   MSQMKIIELEEGWEFM------------------------------QKGVTKLKKILEGQ 32

Query: 418 PEDQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYIN 555
            +D FN+E+YM LYTTIYNMCTQKPPHDYS+QLY KY++AF +YIN
Sbjct: 33  -QDSFNSEEYMMLYTTIYNMCTQKPPHDYSQQLYEKYKEAFEEYIN 77

>pir||T01092 cullin-like protein T10P11.14.1 - Arabidopsis thaliana
           gi|2281115|gb|AAC78267.1|AAC78267 putative cullin-like 1
           protein [Arabidopsis thaliana]
           gi|7269017|emb|CAB80750.1| putative cullin-like 1
           protein [Arabidopsis thaliana]
          Length = 676

 Score = 98.6 bits (244), Expect = 5e-20
 Identities = 51/104 (49%), Positives = 61/104 (58%)
 Frame = +1

Query: 244 DRKPIELAEGWSFMEVGH*HVQQRSLGGICICISRLTSVTSWPKQKGIQKLIRLLEGEPE 423
           +RK I+L +GW +M                              Q GI KL R+LEG  E
Sbjct: 2   ERKTIDLEQGWDYM------------------------------QTGITKLKRILEGLNE 31

Query: 424 DQFNAEQYMHLYTTIYNMCTQKPPHDYSEQLYSKYRDAFNKYIN 555
             F++EQYM LYTTIYNMCTQKPPHDYS+QLY KYR+AF +YIN
Sbjct: 32  PAFDSEQYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYIN 75



EST assemble image


clone accession position
1 LCL077f10_r AV630351 1 487
2 LCL032c09_r AV627805 27 557
3 LCL006b09_r AV626299 28 340




Chlamydomonas reinhardtii
Kazusa DNA Research Institute