KCC003053A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003053A_C01 KCC003053A_c01
tcaaaccccgcgtaggtagactcacctggacagtactcacgacctagaagcgagacttga
cgtcgacgatcgctacgctcTGTGTTCGTCGCGGGGGTTTGTCTTAGCCCTTGCCAGTTG
ACGCCCCCAGACCTGGTGTGCTTACAGTGAAGCACAGCAGCGGTGGGGAGTGCTGGCTAG
GTGGAGCTAGGCGTAGAGGGCCAGCGGACAGAGAATGAGGAACTGAGACTCCCGACGCGA
GACCAAAGGCAGAAAAGCGCGTGATCTAGTATTATCAGCCATGGCGTCCTCTTCAACCTC
GGAGTGGCAGTTCCTGCAATGCTTCGGCGAGCGGACGCCTGGCGAGGACATCCAGGAGGC
CGACATCATCTCGGCCGTGGAGTTCGACTATGATGGCCTGCACCTGGCTACCGGCGACCG
GGGAGGCCGTGTGGTGCTATTTGAGCGAGTCAACCCGCATGTGCGCGGGCCGGGCATGGA
CCAGCGGGCTCCTCCGCCTCTGCCACGTGGAGCATCGTTTGAGTATCGGTACATGACGGA
GTTCCAGTCGCACGAGCCGGAGTTCGACTACCTTAAATCGCTGGAAATTGAGGAGAAAAT
CAACAAGGTCCGGTGGTGCCGGAGCTCAAACAACACGCGGATGCTGTTGTCCACCAACGA
CAAGACCGTGAAGCTATGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003053A_C01 KCC003053A_c01
         (680 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T02952 probable protein phosphatase 2A B regulatory chain 5...   167  2e-40
gb|AAG29596.1|AF196289_1 Ser/Thr specific protein phosphatase 2A...   164  9e-40
ref|NP_849681.1| type 2A protein serine/threonine phosphatase 55...   164  1e-39
ref|NP_564033.1| type 2A protein serine/threonine phosphatase 55...   164  1e-39
pir||G96555 55 kDa B regulatory subunit of phosphatase 2A [impor...   162  3e-39

>pir||T02952 probable protein phosphatase 2A B regulatory chain 55K - rice
           gi|3421413|gb|AAC32204.1| protein phosphatase 2A 55 kDa
           B regulatory subunit [Oryza sativa]
           gi|3421415|gb|AAC32205.1| protein phosphatase 2A 55 kDa
           B regulatory subunit [Oryza sativa]
          Length = 531

 Score =  167 bits (422), Expect = 2e-40
 Identities = 82/127 (64%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
 Frame = +2

Query: 302 EWQFLQCFGERTPGEDIQEADIISAVEFDYDGLHLATGDRGGRVVLFERVNPHVRGPGMD 481
           EW+F Q FGER  GED+QE DIISA+EFD  G HLATGDRGGRVVLFER +        +
Sbjct: 33  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSASRSE 92

Query: 482 -QRAPPPLPRGASFEYRYMTEFQSHEPEFDYLKSLEIEEKINKVRWCRSSNNTRMLLSTN 658
            +R   P+ R    E+RY TEFQSHEPEFDYLKSLEIEEKINK++WC+++NN   LLSTN
Sbjct: 93  LERQDYPIARHP--EFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTN 150

Query: 659 DKTVKLW 679
           DKT+K W
Sbjct: 151 DKTIKYW 157

>gb|AAG29596.1|AF196289_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit beta
           isoform [Medicago sativa subsp. x varia]
          Length = 518

 Score =  164 bits (416), Expect = 9e-40
 Identities = 80/126 (63%), Positives = 90/126 (70%)
 Frame = +2

Query: 302 EWQFLQCFGERTPGEDIQEADIISAVEFDYDGLHLATGDRGGRVVLFERVNPHVRGPGMD 481
           EW+F Q FGERT GE++QE DIISA+EFD  G HLATGDRGGRVVLFER +    G    
Sbjct: 20  EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESRR 79

Query: 482 QRAPPPLPRGASFEYRYMTEFQSHEPEFDYLKSLEIEEKINKVRWCRSSNNTRMLLSTND 661
                        E+RY TEFQSHEPEFDYLKSLEIEEKINK+RWC+ +N    LLSTND
Sbjct: 80  DSERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTND 139

Query: 662 KTVKLW 679
           KT+K W
Sbjct: 140 KTIKFW 145

>ref|NP_849681.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory
           subunit [Arabidopsis thaliana] gi|25518063|pir||B86312
           type 2A protein serine/threonine phosphatase 55K
           regulatory chain F11A6.6 - Arabidopsis thaliana
           gi|9802743|gb|AAF99812.1|AC034257_4 type 2A protein
           serine/threonine phosphatase 55kDa B regulatory subunit
           [Arabidopsis thaliana]
           gi|13877637|gb|AAK43896.1|AF370519_1 type 2A protein
           serine/threonine phosphatase 55kDa B regulatory subunit
           [Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type
           2A protein serine/threonine phosphatase 55kDa B
           regulatory subunit [Arabidopsis thaliana]
          Length = 500

 Score =  164 bits (414), Expect = 1e-39
 Identities = 81/126 (64%), Positives = 91/126 (71%)
 Frame = +2

Query: 302 EWQFLQCFGERTPGEDIQEADIISAVEFDYDGLHLATGDRGGRVVLFERVNPHVRGPGMD 481
           EW+F Q FGERT GE++QE DIISA+EFD  G HLATGDRGGRVVLFER +    G    
Sbjct: 17  EWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRK 76

Query: 482 QRAPPPLPRGASFEYRYMTEFQSHEPEFDYLKSLEIEEKINKVRWCRSSNNTRMLLSTND 661
                  P     E+RY TEFQSHEPEFDYLKSLEIEEKINK+RWC+ +N    LLSTND
Sbjct: 77  DLEQTDYPVRHP-EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTND 135

Query: 662 KTVKLW 679
           KT+K W
Sbjct: 136 KTIKYW 141

>ref|NP_564033.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory
           subunit [Arabidopsis thaliana] gi|1408460|gb|AAB60777.1|
           type 2A protein serine/threonine phosphatase 55 kDa B
           regulatory subunit gi|15010728|gb|AAK74023.1|
           At1g17720/F11A6_14 [Arabidopsis thaliana]
           gi|23308483|gb|AAN18211.1| At1g17720/F11A6_14
           [Arabidopsis thaliana]
          Length = 501

 Score =  164 bits (414), Expect = 1e-39
 Identities = 81/126 (64%), Positives = 91/126 (71%)
 Frame = +2

Query: 302 EWQFLQCFGERTPGEDIQEADIISAVEFDYDGLHLATGDRGGRVVLFERVNPHVRGPGMD 481
           EW+F Q FGERT GE++QE DIISA+EFD  G HLATGDRGGRVVLFER +    G    
Sbjct: 17  EWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRK 76

Query: 482 QRAPPPLPRGASFEYRYMTEFQSHEPEFDYLKSLEIEEKINKVRWCRSSNNTRMLLSTND 661
                  P     E+RY TEFQSHEPEFDYLKSLEIEEKINK+RWC+ +N    LLSTND
Sbjct: 77  DLEQTDYPVRHP-EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTND 135

Query: 662 KTVKLW 679
           KT+K W
Sbjct: 136 KTIKYW 141

>pir||G96555 55 kDa B regulatory subunit of phosphatase 2A [imported] -
           Arabidopsis thaliana
           gi|12321676|gb|AAG50878.1|AC025294_16 55 kDa B
           regulatory subunit of phosphatase 2A [Arabidopsis
           thaliana]
          Length = 512

 Score =  162 bits (411), Expect = 3e-39
 Identities = 83/140 (59%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
 Frame = +2

Query: 263 DLVLSAMASSSTS-EWQFLQCFGERTPGEDIQEADIISAVEFDYDGLHLATGDRGGRVVL 439
           D V++A A  S   EW+F Q FGER+ GE++QE DIISA+EFD  G HLATGDRGGRVVL
Sbjct: 5   DEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVL 64

Query: 440 FERVNPHVRGPGMDQRAPPPLPRGASFEYRYMTEFQSHEPEFDYLKSLEIEEKINKVRWC 619
           FER + +       +      P     E+RY TEFQSH+PEFDYLKSLEIEEKINK+RWC
Sbjct: 65  FERTDTNNSSGTRRELEEADYPLRHP-EFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWC 123

Query: 620 RSSNNTRMLLSTNDKTVKLW 679
           +++N    LLSTNDKT+K W
Sbjct: 124 QTANGALFLLSTNDKTIKFW 143



EST assemble image


clone accession position
1 LCL088e08_r AV631084 1 542
2 LCL004b03_r AV626198 351 680




Chlamydomonas reinhardtii
Kazusa DNA Research Institute