Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003051A_C01 KCC003051A_c01
(573 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH27708.1| SFPQ protein [Homo sapiens] 67 2e-10
ref|NP_005057.1| splicing factor proline/glutamine rich (polypyr... 67 2e-10
gb|AAH51192.1| Splicing factor proline/glutamine rich (polypyrim... 65 5e-10
ref|NP_076092.1| splicing factor proline/glutamine rich (polypyr... 63 3e-09
gb|AAQ63049.1| diaphanous 1 [Homo sapiens] 59 4e-08
>gb|AAH27708.1| SFPQ protein [Homo sapiens]
Length = 525
Score = 67.0 bits (162), Expect = 2e-10
Identities = 58/162 (35%), Positives = 66/162 (39%), Gaps = 1/162 (0%)
Frame = -2
Query: 491 LLQDRGAPGLGPWPLLAQPPQTPPGPAHQQWLPAAVLPGPAWSQPPPSAAHRLLPL*QGP 312
L Q+RG G GP +PP PP P QQ P P P QPPP Q
Sbjct: 40 LNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPP--QQPPPHQPPPHPQPHQQQ 97
Query: 311 SPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTPGTRRPACPPGSPAATTSWAPPPAVPGA 132
PP P P S + + AP G A + PA PP TS APP + PG
Sbjct: 98 QPPPP--PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPP------TSGAPPGSGPGP 149
Query: 131 TRVCPRASVLTAGRPGPPHPLPAGCQW-LTQP*AAAPEPLPA 9
T P A +T+ PG P P P T P A P P PA
Sbjct: 150 TPTPPPA--VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPA 189
Score = 33.9 bits (76), Expect = 1.6
Identities = 41/146 (28%), Positives = 47/146 (32%), Gaps = 13/146 (8%)
Frame = -2
Query: 473 APGLGPWPLLAQ--PPQTPP--------GPAHQQWLPAAVL---PGPAWSQPPPSAAHRL 333
APG+G P + PP TPP GP P AV PG PP S
Sbjct: 118 APGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTT 177
Query: 332 LPL*QGPSPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTPGTRRPACPPGSPAATTSWAP 153
P GP PP +P P +G PG + PG P
Sbjct: 178 PPQAGGPPPPPAAVP----------GPGPGPKQGPG---PGGPKGGKMPGGP-------K 217
Query: 152 PPAVPGATRVCPRASVLTAGRPGPPH 75
P PG + G P PPH
Sbjct: 218 PGGGPGLS--------TPGGHPKPPH 235
>ref|NP_005057.1| splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated); splicing factor
proline/glutamine rich (polypyrimidine tract-binding
protein-associated); PTB-associated splicing factor
[Homo sapiens] gi|1709851|sp|P23246|SFPQ_HUMAN Splicing
factor, proline-and glutamine-rich (Polypyrimidine
tract-binding protein-associated splicing factor)
(PTB-associated splicing factor) (PSF) (DNA-binding
P52/P100 complex, 100 kDa subunit) gi|423054|pir||A46302
PTB-associated splicing factor, long form - human
gi|38458|emb|CAA50283.1| PTB-associated splicing factor
[Homo sapiens]
Length = 707
Score = 67.0 bits (162), Expect = 2e-10
Identities = 58/162 (35%), Positives = 66/162 (39%), Gaps = 1/162 (0%)
Frame = -2
Query: 491 LLQDRGAPGLGPWPLLAQPPQTPPGPAHQQWLPAAVLPGPAWSQPPPSAAHRLLPL*QGP 312
L Q+RG G GP +PP PP P QQ P P P QPPP Q
Sbjct: 40 LNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPP--QQPPPHQPPPHPQPHQQQ 97
Query: 311 SPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTPGTRRPACPPGSPAATTSWAPPPAVPGA 132
PP P P S + + AP G A + PA PP TS APP + PG
Sbjct: 98 QPPPP--PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPP------TSGAPPGSGPGP 149
Query: 131 TRVCPRASVLTAGRPGPPHPLPAGCQW-LTQP*AAAPEPLPA 9
T P A +T+ PG P P P T P A P P PA
Sbjct: 150 TPTPPPA--VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPA 189
Score = 33.9 bits (76), Expect = 1.6
Identities = 41/146 (28%), Positives = 47/146 (32%), Gaps = 13/146 (8%)
Frame = -2
Query: 473 APGLGPWPLLAQ--PPQTPP--------GPAHQQWLPAAVL---PGPAWSQPPPSAAHRL 333
APG+G P + PP TPP GP P AV PG PP S
Sbjct: 118 APGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTT 177
Query: 332 LPL*QGPSPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTPGTRRPACPPGSPAATTSWAP 153
P GP PP +P P +G PG + PG P
Sbjct: 178 PPQAGGPPPPPAAVP----------GPGPGPKQGPG---PGGPKGGKMPGGP-------K 217
Query: 152 PPAVPGATRVCPRASVLTAGRPGPPH 75
P PG + G P PPH
Sbjct: 218 PGGGPGLS--------TPGGHPKPPH 235
>gb|AAH51192.1| Splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated) [Homo sapiens]
Length = 707
Score = 65.5 bits (158), Expect = 5e-10
Identities = 57/162 (35%), Positives = 65/162 (39%), Gaps = 1/162 (0%)
Frame = -2
Query: 491 LLQDRGAPGLGPWPLLAQPPQTPPGPAHQQWLPAAVLPGPAWSQPPPSAAHRLLPL*QGP 312
L Q+RG G GP +PP PP P QQ P P P QPPP Q
Sbjct: 40 LNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPP--QQPPPHQPPPHPQPHQQQ 97
Query: 311 SPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTPGTRRPACPPGSPAATTSWAPPPAVPGA 132
PP P P S + + AP G + PA PP TS APP + PG
Sbjct: 98 QPPPP--PQDSSKPVVAQGPGPAPGVGSTPPASSSAPPATPP------TSGAPPGSGPGP 149
Query: 131 TRVCPRASVLTAGRPGPPHPLPAGCQW-LTQP*AAAPEPLPA 9
T P A +T+ PG P P P T P A P P PA
Sbjct: 150 TPTPPPA--VTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPA 189
Score = 32.3 bits (72), Expect = 4.7
Identities = 36/124 (29%), Positives = 42/124 (33%), Gaps = 16/124 (12%)
Frame = -2
Query: 473 APGLGPWPLLAQ--PPQTPP--------GPAHQQWLPAAVL---PGPAWSQPPPSAAHRL 333
APG+G P + PP TPP GP P AV PG PP S
Sbjct: 118 APGVGSTPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTT 177
Query: 332 LPL*QGPSPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTP-GTRRPACPP--GSPAATTS 162
P GP PP +P P +G P G + P P G P +T
Sbjct: 178 PPQAGGPPPPPAAVP----------GPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTP 227
Query: 161 WAPP 150
P
Sbjct: 228 GGHP 231
>ref|NP_076092.1| splicing factor proline/glutamine rich (polypyrimidine tract
binding protein associated) [Mus musculus]
gi|17136071|gb|AAK60397.1| PTB-associated splicing
factor [Mus musculus]
Length = 699
Score = 62.8 bits (151), Expect = 3e-09
Identities = 63/165 (38%), Positives = 70/165 (42%), Gaps = 3/165 (1%)
Frame = -2
Query: 491 LLQDRGAPGLGPWPLLAQPPQTPPGPAHQQWLPAAVLPGPAWSQPPP--SAAHRLLPL*Q 318
L Q+RG +GP P +PP PP P QQ P P P QPPP P Q
Sbjct: 40 LNQNRGP--MGPGPGGPKPPLPPPPPHQQQQQPPPQQPPP--QQPPPHQQPPPHQPPHQQ 95
Query: 317 GPSPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTPGTRRPACPPGSPAATTSWAPPPAVP 138
P PP PV S +S+AP A S P PA PP T+ APP P
Sbjct: 96 PPPPPQESKPVVPQGPGSAPGVSSAPP--PAVSAP----PANPP------TTGAPPG--P 141
Query: 137 GATRVCPRASVLTAGRPGPPHP-LPAGCQWLTQP*AAAPEPLPAG 6
G T P A TA PGPP P P+ T P P P PAG
Sbjct: 142 GPTPTPPPAVPSTA--PGPPPPSTPSSGVSTTPPQTGGPPPPPAG 184
>gb|AAQ63049.1| diaphanous 1 [Homo sapiens]
Length = 1272
Score = 59.3 bits (142), Expect = 4e-08
Identities = 57/166 (34%), Positives = 65/166 (38%), Gaps = 10/166 (6%)
Frame = -2
Query: 473 APGLGPWPLLAQPPQTPPGPAHQQWLPAAV-------LPG-PAWSQPPPSAAHRLLPL*Q 318
APG P PP PP P LP V LPG A S PPP + +P
Sbjct: 601 APGDSTTPPPPPPPPPPPPP-----LPGGVCISSPPSLPGGTAISPPPPLSGDATIP--- 652
Query: 317 GPSPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTPGTRRPACPPGSPAATTSWAPPPAVP 138
P PPLPE + S S+ P GT P PP P + PPP +P
Sbjct: 653 -PPPPLPE-------GVGIPSPSSLPG--------GTAIPP-PPPLPGSARIPPPPPPLP 695
Query: 137 GATRVCPRASVL--TAGRPGPPHPLPAGCQWLTQP*AAAPEPLPAG 6
G+ + P L AG P PP PLP G P P P P G
Sbjct: 696 GSAGIPPPPPPLPGEAGMPPPPPPLPGG------PGIPPPPPFPGG 735
Score = 41.2 bits (95), Expect = 0.010
Identities = 33/117 (28%), Positives = 42/117 (35%)
Frame = -2
Query: 356 PPSAAHRLLPL*QGPSPPLPELPVTSHRAFSMRSMSTAPTRGQAHSTPGTRRPACPPGSP 177
PPS R P PP P LP S + P G + + P P PP
Sbjct: 573 PPSVPSR------APVPPAPPLPGDSGTI-----IPPPPAPGDSTTPPPPPPPPPPPPPL 621
Query: 176 AATTSWAPPPAVPGATRVCPRASVLTAGRPGPPHPLPAGCQWLTQP*AAAPEPLPAG 6
+ PP++PG T + P + PP PLP G +P LP G
Sbjct: 622 PGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVG------IPSPSSLPGG 672
