Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003036A_C01 KCC003036A_c01
(417 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001185.2| hyperpolarization activated cyclic nucleotide-g... 46 1e-04
gb|AAC28444.2| hyperpolarization-activated, cyclic nucleotide-ga... 45 2e-04
dbj|BAC03928.1| unnamed protein product [Homo sapiens] 40 0.006
ref|XP_330525.1| predicted protein [Neurospora crassa] gi|289256... 40 0.006
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|... 40 0.008
>ref|NP_001185.2| hyperpolarization activated cyclic nucleotide-gated potassium channel
2; brain cyclic nucleotide gated channel 2 [Homo sapiens]
gi|30580783|sp|Q9UL51|HCN2_HUMAN Potassium/sodium
hyperpolarization-activated cyclic nucleotide-gated
channel 2 (Brain cyclic nucleotide gated channel 2)
(BCNG-2) gi|4775349|emb|CAB42602.1|
hyperpolarization-activated cation channel HCN2 [Homo
sapiens] gi|4803850|emb|CAB42630.1|
hyperpolarization-activated cyclic nucleotide-gated
channel hHCN2 [Homo sapiens]
Length = 889
Score = 45.8 bits (107), Expect = 1e-04
Identities = 41/122 (33%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Frame = +1
Query: 34 PLSLALRRRCRRPRPGARPRAPLHSAPPPLAGPPFRCSPRARAR-------ASPLSARAL 192
PL+L R RRP PG P A PPP + P SPRA A+PL+ AL
Sbjct: 749 PLALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPAL 808
Query: 193 CPTRWRWFAVRPL---PPTWTPRTPSSSSSSAA*STRTPS*MPWWGPLCGFPSASLRVTR 363
P R A RPL P+ P ++S+ S+ TP P PS R +
Sbjct: 809 -PARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLRPTPAARAAAPSPDRRDSA 867
Query: 364 CP 369
P
Sbjct: 868 SP 869
>gb|AAC28444.2| hyperpolarization-activated, cyclic nucleotide-gated channel 2 [Homo
sapiens]
Length = 889
Score = 45.1 bits (105), Expect = 2e-04
Identities = 41/122 (33%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Frame = +1
Query: 34 PLSLALRRRCRRPRPGARPRAPLHSAPPPLAGPPFRCSPRARAR-------ASPLSARAL 192
PL+L R RRP PG P A PPP + P SPRA A+PL+ AL
Sbjct: 749 PLALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPAL 808
Query: 193 CPTRWRWFAVRPL---PPTWTPRTPSSSSSSAA*STRTPS*MPWWGPLCGFPSASLRVTR 363
P R A RPL P+ P ++S+ S+ TP P PS R +
Sbjct: 809 -PARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSA 867
Query: 364 CP 369
P
Sbjct: 868 SP 869
>dbj|BAC03928.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 40.4 bits (93), Expect = 0.006
Identities = 20/43 (46%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Frame = +1
Query: 76 PGARPRAPLHSAPPPLAGPPFRCSPRARARASPL--SARALCP 198
PG R RAPLH AP PL GP F C + + P S CP
Sbjct: 85 PGERTRAPLHPAPHPLVGPVFYCGEDGQGKLRPAERSPSPSCP 127
>ref|XP_330525.1| predicted protein [Neurospora crassa] gi|28925602|gb|EAA34623.1|
predicted protein [Neurospora crassa]
Length = 452
Score = 40.4 bits (93), Expect = 0.006
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 70 PRPGAR-PRAPLHSAPPPLAGPPFRCSPRARARASPLSARALCPTRWRWFAVRPLPPTWT 246
P PG+R P A +HS+ PP A PP P + A P SA P A P PPT
Sbjct: 223 PPPGSRKPSAAIHSSAPPSAPPP----PPSFAPPPPSSAAPSLPP-----APPPPPPTAA 273
Query: 247 PRTPSSSSSS 276
PR P + S S
Sbjct: 274 PRPPPAPSRS 283
Score = 31.2 bits (69), Expect = 3.5
Identities = 28/88 (31%), Positives = 38/88 (42%)
Frame = +1
Query: 40 SLALRRRCRRPRPGARPRAPLHSAPPPLAGPPFRCSPRARARASPLSARALCPTRWRWFA 219
++A++ R + P AP PPP PP PR+ A + SA A P
Sbjct: 301 NIAVQAAIRAASSASSPAAP---PPPP---PPPSAPPRSTASSPSHSAPAPPP------- 347
Query: 220 VRPLPPTWTPRTPSSSSSSAA*STRTPS 303
P PP+ P PS S S + S R+ S
Sbjct: 348 --PPPPSSAPVPPSLSHSPSTRSARSGS 373
>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
blr0521 [Bradyrhizobium japonicum USDA 110]
Length = 745
Score = 40.0 bits (92), Expect = 0.008
Identities = 35/111 (31%), Positives = 44/111 (39%)
Frame = +1
Query: 70 PRPGARPRAPLHSAPPPLAGPPFRCSPRARARASPLSARALCPTRWRWFAVRPLPPTWTP 249
P P ARP PPP AGP R +P A +P++ PT P TP
Sbjct: 167 PPPAARPTPT--PPPPPPAGPAARPTPAPTATPTPVAPPPAAPTARPGSPAPAATPAPTP 224
Query: 250 RTPSSSSSSAA*STRTPS*MPWWGPLCGFPSASLRVTRCPTFWPTPSSRPG 402
TP+ +++ A +T P P P G P A P P RPG
Sbjct: 225 -TPAPTATPAPTATPAPGSTP-GAPPAGRPGA-----------PPPGVRPG 262
Score = 39.3 bits (90), Expect = 0.013
Identities = 34/112 (30%), Positives = 41/112 (36%)
Frame = +1
Query: 76 PGARPRAPLHSAPPPLAGPPFRCSPRARARASPLSARALCPTRWRWFAVRPLPPTWTPRT 255
P ARP AP APPP A P P A P P PP P
Sbjct: 142 PAARP-APTPPAPPPAAAPQHAPPPPPPPAARPT----------------PTPPPPPPAG 184
Query: 256 PSSSSSSAA*STRTPS*MPWWGPLCGFPSASLRVTRCPTFWPTPSSRPGVCA 411
P++ + A +T TP P P S + T PT P P++ P A
Sbjct: 185 PAARPTPAPTATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTA 236
Score = 32.7 bits (73), Expect = 1.2
Identities = 38/138 (27%), Positives = 50/138 (35%), Gaps = 5/138 (3%)
Frame = +1
Query: 13 LVISKCRPLSLALRRRCRRPRPG----ARPRAPLH-SAPPPLAGPPFRCSPRARARASPL 177
LV+++ +P + ++P G A P AP +APPP A PP + A A P
Sbjct: 32 LVVAQAQPQETGPDGKPKQPPKGPPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPR 91
Query: 178 SARALCPTRWRWFAVRPLPPTWTPRTPSSSSSSAA*STRTPS*MPWWGPLCGFPSASLRV 357
A P P PP P P AA + PS P P P+
Sbjct: 92 PAAPPPP---------PPPPAARPAPPPPPPPPAA--PKQPSPPPAAAPQQHAPTPPPPA 140
Query: 358 TRCPTFWPTPSSRPGVCA 411
PTP + P A
Sbjct: 141 PPAARPAPTPPAPPPAAA 158
