KCC003033A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003033A_C01 KCC003033A_c01
GTAATTACGACTTGCCTTACTCCATTCCAACCCTCTGGCTTACCGCGTCACAATCCTCAC
TCCTAACGCAGTCAGTGGGCAATCTAGAACTCTTGTTTCCTTCCTCTTGCATAGATCGAG
CCGGCATAAGCGCTGCTACAAACACATTGCAAACTATAACATAGTATTCAGATTGGAGGT
GAAGCTTCGGCAAACAGTTCTTTATTTAGGCGGGGACTCCAGTTGCCGGGGCCCGGAGCT
TACCTTCAATAACTAGCACGCTTGAAAGATGATTGAAGTGGTCCTGAACGATCGCTTGGT
GAAGAAGGTCCGTGTCAAGTGCAATGAGGACGACACCATCGGGGACCTGAAGAAGCTGGT
GGCCGCGCAGACCGGCACACGGCCAGAGAAGATCCGGATTCAGAAGTGGTACACAATCTA
CAAGGACCACATCACGCTCGCAGACTATGAGATCCATGACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003033A_C01 KCC003033A_c01
         (461 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_190104.1| ubiquitin family [Arabidopsis thaliana] gi|1135...   122  1e-27
ref|NP_199045.1| ubiquitin family [Arabidopsis thaliana] gi|1017...   122  2e-27
gb|EAA18158.1| ubiquitin-like protein [Plasmodium yoelii yoelii]      117  6e-26
ref|NP_701728.1| ubiquitin-like protein, putative [Plasmodium fa...   115  3e-25
ref|NP_077268.1| ubiquitin-like 5 [Homo sapiens] gi|13384784|ref...   109  2e-23

>ref|NP_190104.1| ubiquitin family [Arabidopsis thaliana] gi|11358004|pir||T47458
           hypothetical protein T14D3.120 - Arabidopsis thaliana
           gi|6911856|emb|CAB72156.1| putative protein [Arabidopsis
           thaliana]
          Length = 73

 Score =  122 bits (307), Expect = 1e-27
 Identities = 59/64 (92%), Positives = 60/64 (93%)
 Frame = +2

Query: 269 MIEVVLNDRLVKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADY 448
           MIEVVLNDRL KKVRVKCNE+DTIGDLKKLVAAQTGTRPEKIRIQKWY IYKDHI L DY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60

Query: 449 EIHD 460
           EIHD
Sbjct: 61  EIHD 64

>ref|NP_199045.1| ubiquitin family [Arabidopsis thaliana] gi|10177015|dbj|BAB10203.1|
           ubiquitin-like protein [Arabidopsis thaliana]
           gi|13899065|gb|AAK48954.1|AF370527_1 ubiquitin-like
           protein [Arabidopsis thaliana]
           gi|18377566|gb|AAL66949.1| ubiquitin-like protein
           [Arabidopsis thaliana]
          Length = 73

 Score =  122 bits (306), Expect = 2e-27
 Identities = 59/64 (92%), Positives = 60/64 (93%)
 Frame = +2

Query: 269 MIEVVLNDRLVKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADY 448
           MIEVVLNDRL KKVRVKCN+DDTIGDLKKLVAAQTGTR EKIRIQKWY IYKDHITL DY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 449 EIHD 460
           EIHD
Sbjct: 61  EIHD 64

>gb|EAA18158.1| ubiquitin-like protein [Plasmodium yoelii yoelii]
          Length = 73

 Score =  117 bits (293), Expect = 6e-26
 Identities = 55/64 (85%), Positives = 59/64 (91%)
 Frame = +2

Query: 269 MIEVVLNDRLVKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADY 448
           MIE++LNDRL KK+RVKCN DDTIGDLKKLVAAQTGTR +KIRIQKWYTIYKDHITL DY
Sbjct: 1   MIEIILNDRLGKKIRVKCNPDDTIGDLKKLVAAQTGTRADKIRIQKWYTIYKDHITLQDY 60

Query: 449 EIHD 460
           EI D
Sbjct: 61  EIKD 64

>ref|NP_701728.1| ubiquitin-like protein, putative [Plasmodium falciparum 3D7]
           gi|23496900|gb|AAN36452.1|AE014850_17 ubiquitin-like
           protein, putative [Plasmodium falciparum 3D7]
          Length = 73

 Score =  115 bits (287), Expect = 3e-25
 Identities = 54/64 (84%), Positives = 58/64 (90%)
 Frame = +2

Query: 269 MIEVVLNDRLVKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADY 448
           MIE++LNDRL KK+RVKCN DDTIGDLKKLVAAQTGTR +KIRIQKWY IYKDHITL DY
Sbjct: 1   MIEIILNDRLGKKIRVKCNPDDTIGDLKKLVAAQTGTRADKIRIQKWYIIYKDHITLQDY 60

Query: 449 EIHD 460
           EI D
Sbjct: 61  EIKD 64

>ref|NP_077268.1| ubiquitin-like 5 [Homo sapiens] gi|13384784|ref|NP_079677.1|
           ubiquitin-like 5 [Mus musculus]
           gi|11345430|gb|AAG34704.1|AF318186_1 beacon [Psammomys
           obesus] gi|12832924|dbj|BAB22312.1| unnamed protein
           product [Mus musculus] gi|12834985|dbj|BAB23111.1|
           unnamed protein product [Mus musculus]
           gi|12841455|dbj|BAB25215.1| unnamed protein product [Mus
           musculus] gi|12844907|dbj|BAB26545.1| unnamed protein
           product [Mus musculus] gi|12849788|dbj|BAB28481.1|
           unnamed protein product [Mus musculus]
           gi|13172662|gb|AAK14178.1|AF313915_1 ubiquitin-like 5
           protein [Homo sapiens] gi|13937891|gb|AAH07053.1| UBL5
           protein [Homo sapiens] gi|20306397|gb|AAH28498.1| Fbxl12
           protein [Mus musculus] gi|26341750|dbj|BAC34537.1|
           unnamed protein product [Mus musculus]
           gi|30583549|gb|AAP36019.1| ubiquitin-like 5 [Homo
           sapiens]
          Length = 73

 Score =  109 bits (272), Expect = 2e-23
 Identities = 51/64 (79%), Positives = 57/64 (88%)
 Frame = +2

Query: 269 MIEVVLNDRLVKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADY 448
           MIEVV NDRL KKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWYTI+KDH++L DY
Sbjct: 1   MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 449 EIHD 460
           EIHD
Sbjct: 61  EIHD 64



EST assemble image


clone accession position
1 MX047b04_r BP087928 1 352
2 MX031e12_r BP087313 1 367
3 LC098c07_r AV625817 20 461




Chlamydomonas reinhardtii
Kazusa DNA Research Institute