KCC003014A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003014A_C01 KCC003014A_c01
gggcaccaacgacgagacgcgcacagcctacctggatagccaggacgtggccaagatgac
caTGGCGGCGCTACGCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAA
GGCCTGGACCACCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAACGCCAA
GGTGACCACGGTTCCCACCTGGCTTTTGAAGCGCACGCGCGGCGTGCTGCGCTCCATGCA
ATGGGCCGCGGACGCCGCAGACCGCCTGGCCTTTGCGGAGGTGCTTTCCAACAACGAGGT
GTGGCAGGCATCGGCCGCTGACATGGCGGAGACGTACCGCCTGCTGGACATGGACCCCGG
CAGCGTGACGGACCTGGAGACCTACCTGCAGGAGTATTTCAGCCGCATCCTGAAGAAGCT
CAAGGAGGTGGGCGCCTCTGCTGACCGCACCAACTTCTACGTGTAAGCGGGCCAAGACGT
TGCCTGTACGGCTAGACATACGGCTGTATGTGTTTGGCCGGTGGCGTGTGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003014A_C01 KCC003014A_c01
         (532 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_195251.1| vestitone reductase-related [Arabidopsis thalia...   152  3e-36
ref|ZP_00111826.1| COG0702: Predicted nucleoside-diphosphate-sug...   134  6e-31
ref|NP_441851.1| ycf39 gene product [Synechocystis sp. PCC 6803]...   133  1e-30
ref|NP_053848.1| ORF39 [Porphyra purpurea] gi|1723342|sp|P51238|...   125  3e-28
ref|ZP_00072916.1| COG0702: Predicted nucleoside-diphosphate-sug...   125  4e-28

>ref|NP_195251.1| vestitone reductase-related [Arabidopsis thaliana]
           gi|7486019|pir||T06132 hypothetical protein F23E12.190 -
           Arabidopsis thaliana gi|3080425|emb|CAA18744.1| putative
           protein [Arabidopsis thaliana]
           gi|7270477|emb|CAB80242.1| putative protein [Arabidopsis
           thaliana] gi|18087583|gb|AAL58922.1|AF462834_1
           AT4g35250/F23E12_190 [Arabidopsis thaliana]
           gi|22137054|gb|AAM91372.1| At4g35250/F23E12_190
           [Arabidopsis thaliana]
          Length = 395

 Score =  152 bits (383), Expect = 3e-36
 Identities = 77/153 (50%), Positives = 109/153 (70%)
 Frame = +2

Query: 2   GTNDETRTAYLDSQDVAKMTMAALRGDKTSRKTLPLSGPKAWTTKEVIELCEKMADTNAK 181
           GT+  TR AY+D+QD+A++T+ ALR +K + K L  +GP+AWTT+EVI LCE++A  +A 
Sbjct: 245 GTDAPTRVAYMDTQDIARLTLIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDAN 304

Query: 182 VTTVPTWLLKRTRGVLRSMQWAADAADRLAFAEVLSNNEVWQASAADMAETYRLLDMDPG 361
           VTTVP  +L+ TR + R  QW  D ADRLAF+EVLS++ V+   +A M ET  LL +D  
Sbjct: 305 VTTVPVSVLRVTRQLTRFFQWTNDVADRLAFSEVLSSDTVF---SAPMTETNSLLGVDQK 361

Query: 362 SVTDLETYLQEYFSRILKKLKEVGASADRTNFY 460
            +  LE YLQ+YFS ILKKLK++ A + +++ Y
Sbjct: 362 DMVTLEKYLQDYFSNILKKLKDLKAQSKQSDIY 394

>ref|ZP_00111826.1| COG0702: Predicted nucleoside-diphosphate-sugar epimerases [Nostoc
           punctiforme]
          Length = 332

 Score =  134 bits (338), Expect = 6e-31
 Identities = 66/142 (46%), Positives = 96/142 (67%)
 Frame = +2

Query: 5   TNDETRTAYLDSQDVAKMTMAALRGDKTSRKTLPLSGPKAWTTKEVIELCEKMADTNAKV 184
           T + +  AY+D+QD+AK  + AL   +T  +  P+ G +AW+ +E+I LCE+++  +A+V
Sbjct: 168 TGNSSPIAYMDTQDIAKFAIRALSVPETENQAFPVVGTRAWSAEEIINLCERLSGKDARV 227

Query: 185 TTVPTWLLKRTRGVLRSMQWAADAADRLAFAEVLSNNEVWQASAADMAETYRLLDMDPGS 364
           T +P  LL+  RG++RS QW  + ADRLAF EVL++ +   AS   M E Y +  +DP  
Sbjct: 228 TRMPISLLRAVRGLMRSFQWGWNVADRLAFTEVLASGKQLNAS---MDEVYTVFGLDPQQ 284

Query: 365 VTDLETYLQEYFSRILKKLKEV 430
            T LE+YLQEYFSRI+KKLKEV
Sbjct: 285 TTTLESYLQEYFSRIMKKLKEV 306

>ref|NP_441851.1| ycf39 gene product [Synechocystis sp. PCC 6803]
           gi|7469557|pir||S76400 hypothetical protein -
           Synechocystis sp. (strain PCC 6803)
           gi|1653617|dbj|BAA18529.1| ycf39 gene product
           [Synechocystis sp. PCC 6803]
          Length = 326

 Score =  133 bits (335), Expect = 1e-30
 Identities = 67/149 (44%), Positives = 96/149 (63%)
 Frame = +2

Query: 5   TNDETRTAYLDSQDVAKMTMAALRGDKTSRKTLPLSGPKAWTTKEVIELCEKMADTNAKV 184
           T + T  AY+++QDVAK  + A+  D  +RKT P+ G +AW   E+I+LCE+M+  NA++
Sbjct: 168 TGENTPIAYMNTQDVAKFAVRAVELDSVARKTYPVVGSRAWGATEIIQLCERMSGNNARI 227

Query: 185 TTVPTWLLKRTRGVLRSMQWAADAADRLAFAEVLSNNEVWQASAADMAETYRLLDMDPGS 364
           + VP  +L+  R   R  QW  +A+DRLAF+EVL++    +A  ADMA  Y    +DP  
Sbjct: 228 SQVPMAVLRFMRSFTRFFQWTYNASDRLAFSEVLASG---KALTADMAPVYEQFGLDPKE 284

Query: 365 VTDLETYLQEYFSRILKKLKEVGASADRT 451
            T LE+YLQEYF RI+KKLKE+    + T
Sbjct: 285 TTTLESYLQEYFGRIIKKLKELDYEVNPT 313

>ref|NP_053848.1| ORF39 [Porphyra purpurea] gi|1723342|sp|P51238|YC39_PORPU
           HYPOTHETICAL 35.7 KD PROTEIN YCF39 (ORF319)
           gi|2147564|pir||S73159 hypothetical protein 39 - red
           alga (Porphyra purpurea) chloroplast
           gi|1276704|gb|AAC08124.1| hypothetical chloroplast ORF
           39. [Porphyra purpurea]
          Length = 319

 Score =  125 bits (315), Expect = 3e-28
 Identities = 61/142 (42%), Positives = 91/142 (63%)
 Frame = +2

Query: 5   TNDETRTAYLDSQDVAKMTMAALRGDKTSRKTLPLSGPKAWTTKEVIELCEKMADTNAKV 184
           T + T  AY+D+QD AK+ + +L    T  + LPL G KAWT+ E+I LCEK++    ++
Sbjct: 168 TGESTPIAYIDTQDAAKLVIKSLGVPSTENRILPLVGNKAWTSAEIITLCEKLSGQKTQI 227

Query: 185 TTVPTWLLKRTRGVLRSMQWAADAADRLAFAEVLSNNEVWQASAADMAETYRLLDMDPGS 364
           + +P  LLK  R + +++QW  + +DRLAFAEVL++ E++    A M E Y +L +D   
Sbjct: 228 SQIPLSLLKALRKITKTLQWTWNISDRLAFAEVLTSGEIFM---APMNEVYEILSIDKSE 284

Query: 365 VTDLETYLQEYFSRILKKLKEV 430
           V  LE Y QEYF +ILK LK++
Sbjct: 285 VISLEKYFQEYFGKILKVLKDI 306

>ref|ZP_00072916.1| COG0702: Predicted nucleoside-diphosphate-sugar epimerases
           [Trichodesmium erythraeum IMS101]
          Length = 325

 Score =  125 bits (313), Expect = 4e-28
 Identities = 63/135 (46%), Positives = 88/135 (64%)
 Frame = +2

Query: 26  AYLDSQDVAKMTMAALRGDKTSRKTLPLSGPKAWTTKEVIELCEKMADTNAKVTTVPTWL 205
           AY+D+QD+AK  + AL   +T  K+ P+ GP+AW   E+I +CE+++   AKVT     L
Sbjct: 175 AYMDTQDIAKFAVGALSVPETENKSFPVVGPRAWDANEIIRMCERLSGEKAKVTRTNINL 234

Query: 206 LKRTRGVLRSMQWAADAADRLAFAEVLSNNEVWQASAADMAETYRLLDMDPGSVTDLETY 385
           L+  R   RS QW  + ADRLAFAEVL++    Q   A M + Y L  ++P  +T LE+Y
Sbjct: 235 LRIFRQFTRSFQWGWNVADRLAFAEVLASG---QPIIAPMDDVYSLFGINPQEITTLESY 291

Query: 386 LQEYFSRILKKLKEV 430
           LQEY+SRI+KKLKE+
Sbjct: 292 LQEYYSRIMKKLKEI 306



EST assemble image


clone accession position
1 LC085e05_r AV624995 1 421
2 LCL023g02_r AV627250 63 532




Chlamydomonas reinhardtii
Kazusa DNA Research Institute