KCC002946A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002946A_C01 KCC002946A_c01
CGATGGTGCCGAAAGGCAGCGCCGCGGTGGACCGGTACACGATGGCCACGGTGTTCAGGA
AGGAGAACATGAGCAGGAAGGGGCCGCAGTACACGAAGCAAGTGAGCAGGATGTTGCGAA
CCCACAGCTCGCCCTCCATTTGCTTGTAGTAGGACGACGCCACGAAGCCGGCAATACCGG
CCGTGAGCGCGTAAAGCGCAATGAGGGCCGAGTACAGAGCGCCGCGGTTGTACGGGTAGA
ACACGCCCACCAGCGCCAGCACGAACACAAACAGCGCCAGATAGAAGAGCTGGGTGCCCG
TGCCAACAAAGGCACAGAACAGGTTCTTGTAGGGAGGGAAGCGGAACACGTCGCCGTGCA
CGTACTTCCAGCCCGACTCCTCCTCTTCCATGGCCGGATCGTCCTTGTTGTACTTAATGA
AGTCCGCCTTCAGCACGCGCATCAGGATAGTCGCCAGGAAACCCGTCAGCAGCAGCACGG
TAACGCACGAGTTGATGATGGAGAACCAGTGAATCTCCAGGTGCACGGGGTTGAGGGGAA
AGCGCTCGTAGCGATCCAGGCGGTGCTCACACTTGGTTAGCGTGGGGGTCACTTCACCGA
GTACGTGAACTTCGCTTCACGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002946A_C01 KCC002946A_c01
         (622 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC57816.1| putative Transmembrane 9 superfamily protein mem...   274  7e-73
ref|NP_178306.1| endomembrane protein 70, putative [Arabidopsis ...   273  2e-72
gb|AAO06970.1| Putative endosomal protein [Oryza sativa (japonic...   271  7e-72
ref|NP_198547.2| endomembrane protein 70, putative [Arabidopsis ...   270  1e-71
ref|NP_172919.1| endomembrane protein 70, putative [Arabidopsis ...   270  1e-71

>dbj|BAC57816.1| putative Transmembrane 9 superfamily protein member 1 precursor
           [Oryza sativa (japonica cultivar-group)]
          Length = 589

 Score =  274 bits (701), Expect = 7e-73
 Identities = 129/190 (67%), Positives = 160/190 (83%), Gaps = 1/190 (0%)
 Frame = -1

Query: 568 EHRLDRYERFPLNPVHLEIHWFSIINSCVTVLLLTGFLATILMRVLKADFIKYNKDDPAM 389
           E R+++Y +    P HLEIHWFSIINSCVTVLLLTGFLATILMRVLK DFIKY+ +D ++
Sbjct: 206 EKRMEKYSKSSSMPQHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFIKYSHEDESL 265

Query: 388 EE-EESGWKYVHGDVFRFPPYKNLFCAFVGTGTQLFYLALFVFVLALVGVFYPYNRGALY 212
           E+ EE+GWKY+HGDVFRFP  K+LF A VG+GTQL  LA+F+F+LA+VGVFYPYNRGAL+
Sbjct: 266 EDQEETGWKYIHGDVFRFPQQKSLFAAIVGSGTQLLALAIFIFLLAIVGVFYPYNRGALF 325

Query: 211 SALIALYALTAGIAGFVASSYYKQMEGELWVRNILLTCFVYCGPFLLMFSFLNTVAIVYR 32
           +AL+ +YALT+GIAG+ A+S+Y Q+EG  WVRN++LT  ++CGP  L F FLNTVAI Y 
Sbjct: 326 TALVVIYALTSGIAGYTATSFYLQLEGTNWVRNLILTGCLFCGPLFLTFCFLNTVAIAYS 385

Query: 31  STAALPFGTI 2
           +TAALPFGTI
Sbjct: 386 ATAALPFGTI 395

>ref|NP_178306.1| endomembrane protein 70, putative [Arabidopsis thaliana]
           gi|25346718|pir||D84431 probable endosomal protein
           [imported] - Arabidopsis thaliana
           gi|4406780|gb|AAD20090.1| putative endosomal protein
           [Arabidopsis thaliana] gi|16604501|gb|AAL24256.1|
           At2g01970/F14H20.4 [Arabidopsis thaliana]
          Length = 592

 Score =  273 bits (697), Expect = 2e-72
 Identities = 132/195 (67%), Positives = 161/195 (81%), Gaps = 1/195 (0%)
 Frame = -1

Query: 583 TLTKCEHRLDRYERFPLNPVHLEIHWFSIINSCVTVLLLTGFLATILMRVLKADFIKYNK 404
           T T  E R+D+Y      P HLEIHWFSIINSCVTVLLLTGFLATILMRVLK DF+KY +
Sbjct: 204 TETSFEKRMDKYAMSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQ 263

Query: 403 DDPAMEE-EESGWKYVHGDVFRFPPYKNLFCAFVGTGTQLFYLALFVFVLALVGVFYPYN 227
           D+ A ++ EE+GWKY+HGDVFRFP  K+LF A +G+GTQLF L +F+F+L+LVGVFYPYN
Sbjct: 264 DEEAADDQEETGWKYIHGDVFRFPKNKSLFAASLGSGTQLFTLTIFIFMLSLVGVFYPYN 323

Query: 226 RGALYSALIALYALTAGIAGFVASSYYKQMEGELWVRNILLTCFVYCGPFLLMFSFLNTV 47
           RGAL++AL+ +YALT+GIAG+ ASS+Y Q+EG+ WVRN+LLT  ++CGP  L F FLNTV
Sbjct: 324 RGALFTALVVIYALTSGIAGYTASSFYCQLEGKNWVRNLLLTGGLFCGPLFLTFCFLNTV 383

Query: 46  AIVYRSTAALPFGTI 2
           AI Y +TAALPFGTI
Sbjct: 384 AIAYSATAALPFGTI 398

>gb|AAO06970.1| Putative endosomal protein [Oryza sativa (japonica cultivar-group)]
          Length = 595

 Score =  271 bits (692), Expect = 7e-72
 Identities = 131/195 (67%), Positives = 158/195 (80%), Gaps = 1/195 (0%)
 Frame = -1

Query: 583 TLTKCEHRLDRYERFPLNPVHLEIHWFSIINSCVTVLLLTGFLATILMRVLKADFIKYNK 404
           T T  E R+++Y      P HLE+HWFSIINSCVTVLLLTGFLATILMRVLK DF+KY  
Sbjct: 207 TPTPFEKRMEKYSSSSNLPHHLEVHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAH 266

Query: 403 DDPAMEE-EESGWKYVHGDVFRFPPYKNLFCAFVGTGTQLFYLALFVFVLALVGVFYPYN 227
           D+ A ++ EESGWKY+HGDVFRFP  K+ F A +GTGTQLF L  F+F+LALVGVFYPYN
Sbjct: 267 DEEAADDQEESGWKYIHGDVFRFPKNKSFFSAALGTGTQLFALTTFIFLLALVGVFYPYN 326

Query: 226 RGALYSALIALYALTAGIAGFVASSYYKQMEGELWVRNILLTCFVYCGPFLLMFSFLNTV 47
           RGAL++AL+ +YALT+GIAG++A+S+Y Q+EG  WVRN+LLT  ++CGP  L F FLNTV
Sbjct: 327 RGALFTALVVIYALTSGIAGYIATSFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTV 386

Query: 46  AIVYRSTAALPFGTI 2
           AI Y +TAALPFGTI
Sbjct: 387 AIAYSATAALPFGTI 401

>ref|NP_198547.2| endomembrane protein 70, putative [Arabidopsis thaliana]
          Length = 564

 Score =  270 bits (691), Expect = 1e-71
 Identities = 128/190 (67%), Positives = 161/190 (84%), Gaps = 1/190 (0%)
 Frame = -1

Query: 568 EHRLDRYERFPLNPVHLEIHWFSIINSCVTVLLLTGFLATILMRVLKADFIKYNKDDPAM 389
           E R+++Y      P HLEIHWFSIINSCVTVLLLTGFLATILMRVLK DF+KY  D+ A+
Sbjct: 210 EKRMEKYSLASSMPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAV 269

Query: 388 EE-EESGWKYVHGDVFRFPPYKNLFCAFVGTGTQLFYLALFVFVLALVGVFYPYNRGALY 212
           ++ EE+GWK +HGDVFRFP +K+L  A +G+GTQLF LA+F+F+LALVGVFYPYNRGAL+
Sbjct: 270 DDQEETGWKLIHGDVFRFPKHKSLLAAALGSGTQLFTLAVFIFMLALVGVFYPYNRGALF 329

Query: 211 SALIALYALTAGIAGFVASSYYKQMEGELWVRNILLTCFVYCGPFLLMFSFLNTVAIVYR 32
           +AL+ +YALT+GIAG+ A+S+Y Q+EG  WVRN++LT  ++CGP L+ FSFLNTVAI Y+
Sbjct: 330 TALVVIYALTSGIAGYTAASFYCQLEGTNWVRNVILTGSLFCGPLLITFSFLNTVAIAYQ 389

Query: 31  STAALPFGTI 2
           +TAALPFGTI
Sbjct: 390 ATAALPFGTI 399

>ref|NP_172919.1| endomembrane protein 70, putative [Arabidopsis thaliana]
           gi|15450755|gb|AAK96649.1| T5E21.14/T5E21.14
           [Arabidopsis thaliana] gi|20334722|gb|AAM16222.1|
           At1g14670/T5E21.14 [Arabidopsis thaliana]
          Length = 592

 Score =  270 bits (691), Expect = 1e-71
 Identities = 129/195 (66%), Positives = 161/195 (82%), Gaps = 1/195 (0%)
 Frame = -1

Query: 583 TLTKCEHRLDRYERFPLNPVHLEIHWFSIINSCVTVLLLTGFLATILMRVLKADFIKYNK 404
           T T  E R+++Y      P HLEIHWFSIINSCVTVLLLTGFLATILMRVLK DF+KY +
Sbjct: 204 TETPFEKRMEKYSMSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQ 263

Query: 403 DDPAMEE-EESGWKYVHGDVFRFPPYKNLFCAFVGTGTQLFYLALFVFVLALVGVFYPYN 227
           D+ A ++ EE+GWKY+HGDVFRFP + +LF A +G+GTQLF L +F+F+LALVGVFYPYN
Sbjct: 264 DEEAADDQEETGWKYIHGDVFRFPTHNSLFAASLGSGTQLFTLTIFIFMLALVGVFYPYN 323

Query: 226 RGALYSALIALYALTAGIAGFVASSYYKQMEGELWVRNILLTCFVYCGPFLLMFSFLNTV 47
           RGAL++AL+ +YALT+GIAG+ ++S+Y Q+EG+ WVRN+LLT  ++CGP  L F FLNTV
Sbjct: 324 RGALFTALVVIYALTSGIAGYTSASFYCQLEGKSWVRNLLLTGCLFCGPLFLTFCFLNTV 383

Query: 46  AIVYRSTAALPFGTI 2
           AI Y +TAALPFGTI
Sbjct: 384 AITYTATAALPFGTI 398



EST assemble image


clone accession position
1 LCL018g07_r AV626956 1 413
2 LC056f09_r AV622929 63 622




Chlamydomonas reinhardtii
Kazusa DNA Research Institute