Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002938A_C01 KCC002938A_c01
(795 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC14361.1| glycoprotein Ib [Canis familiaris] 37 0.48
ref|NP_872049.1| WH1 (2N946) [Caenorhabditis elegans] gi|2580919... 36 0.62
ref|NP_741212.1| putative mitochondrial protein (3I221) [Caenorh... 35 1.1
ref|NP_663326.1| scavenger receptor class F, member 1 isoform 4 ... 35 1.4
ref|NP_663325.1| scavenger receptor class F, member 1 isoform 3 ... 35 1.4
>gb|AAC14361.1| glycoprotein Ib [Canis familiaris]
Length = 677
Score = 36.6 bits (83), Expect = 0.48
Identities = 32/148 (21%), Positives = 52/148 (34%)
Frame = -2
Query: 695 GEVVPRAKEQPLYGAQ*LKCAVWSHTVCPTPPQRSLDHSGTTV*DAASYQSDTVAHASRL 516
G ++P +P L+ T PT P +L+ + T + + T+ +
Sbjct: 361 GPIMPTTTPEPTTPPTTLEPTTTPTTPEPTTPPTTLEPTTTPITPEPTMPPTTLEPTTTP 420
Query: 515 LRPDLTMASPPPTDPQTARKPT*HARARMADALCV*GLIALKAHRSKPT*VPSSTAMVKW 336
+ P+ T S PT PQ A PT A + T P++T
Sbjct: 421 ITPEPTTPSTTPTTPQPATTPTTPQPAT-----------------TPTTPQPATTPTTPQ 463
Query: 335 PSQLDSTRSITVPPNTSEPAFQKSVTPP 252
P+ + + PP T EP + P
Sbjct: 464 PTTTPTIPELPTPPTTPEPTMPPTTLEP 491
>ref|NP_872049.1| WH1 (2N946) [Caenorhabditis elegans] gi|25809199|emb|CAD57687.1|
Hypothetical protein C31C9.6 [Caenorhabditis elegans]
Length = 965
Score = 36.2 bits (82), Expect = 0.62
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = -2
Query: 512 RPDLTMASPPPTDPQTARKPT*HA--RARMADALCV*GLIALKAH-RSKPT*VPSSTAMV 342
R A+ P T P+ PT +A + D L+ K R P PS+ +
Sbjct: 385 RDSYRWATKPDTVPKQTPPPTPNAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTI 444
Query: 341 KWPSQLDSTRSITVPPNTSEPAFQKSVTPPPLGRFP 234
K+P ++ S T PP T +PA PPP R P
Sbjct: 445 KFPISTGTSYSSTTPPTTPKPA------PPPPSRIP 474
>ref|NP_741212.1| putative mitochondrial protein (3I221) [Caenorhabditis elegans]
gi|20451171|gb|AAM15536.2|U10438_4 Hypothetical protein
B0280.13 [Caenorhabditis elegans]
Length = 329
Score = 35.4 bits (80), Expect = 1.1
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Frame = -2
Query: 512 RPDLTMASPPPTDPQTARKPT*HA--RARMADALCV*GLIALKAH-RSKPT*VPSSTAMV 342
R A+ P T P+ PT +A + D L+ K R P PS+ +
Sbjct: 105 RDSYRWATKPDTVPKQTPPPTPNAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTI 164
Query: 341 KWPSQLDSTRSITVPPNTSEPAFQKSVTPPPLGRFP 234
K+P + S T PP T +PA PPP R P
Sbjct: 165 KFPISTGPSYSSTTPPTTPKPA------PPPPSRIP 194
>ref|NP_663326.1| scavenger receptor class F, member 1 isoform 4 precursor; acetyl
LDL receptor; scavenger receptor expressed by
endothelial cells [Homo sapiens]
gi|21685562|dbj|BAC02695.1| SREC-4 [Homo sapiens]
Length = 337
Score = 35.0 bits (79), Expect = 1.4
Identities = 26/95 (27%), Positives = 32/95 (33%)
Frame = +3
Query: 243 AERWWCDTFLECRFGGIRRYCDASGGI*LGWPLDHCGGRWNLSRLGTMCLESNQTSHTES 422
A+RW C G R CD + G+ HC W S C + + E
Sbjct: 122 ADRWGARCEFPCACGPHGR-CDPATGV------CHCEPGWWSSTCRRPCQCNTAAARCEQ 174
Query: 423 ISHACACVLCRFAGRLGVSGWWGSHCEVRSQEPGS 527
+ AC C GWWG C R GS
Sbjct: 175 ATGACVCK----------PGWWGRRCSFRCNCHGS 199
>ref|NP_663325.1| scavenger receptor class F, member 1 isoform 3 precursor; acetyl
LDL receptor; scavenger receptor expressed by
endothelial cells [Homo sapiens]
Length = 569
Score = 35.0 bits (79), Expect = 1.4
Identities = 26/95 (27%), Positives = 32/95 (33%)
Frame = +3
Query: 243 AERWWCDTFLECRFGGIRRYCDASGGI*LGWPLDHCGGRWNLSRLGTMCLESNQTSHTES 422
A+RW C G R CD + G+ HC W S C + + E
Sbjct: 122 ADRWGARCEFPCACGPHGR-CDPATGV------CHCEPGWWSSTCRRPCQCNTAAARCEQ 174
Query: 423 ISHACACVLCRFAGRLGVSGWWGSHCEVRSQEPGS 527
+ AC C GWWG C R GS
Sbjct: 175 ATGACVCK----------PGWWGRRCSFRCNCHGS 199
