KCC002937A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002937A_C01 KCC002937A_c01
gTAAACTCGAACGCAATATACTAGATATATCAACCATCGGCCCAGAACCTCGCCTGCCAA
GGTTCGGACAACCGTGTGCCCTTGCTGCCGTCTTCGCTTGATAAAACTACATCCGTGTTA
TTGAAAATCTAATATGGAAAATGGTGGCAGCAATGGCGACCAGGAGGTGTCGACCTCGGA
TGCGGTTGAGGCCTTCCTCGCCGACAGCCCCGTATCGGGAGAGGCGGTTGCGGATTCAGT
AGCTGCATTCATCGAGCGGCACAGGAGCAGTGGCAATACGGCCTTTACCGGACGTGCCGG
GACCGGGCTCAGCAGGCCCATAGTGGTGGTGACCTCAGGAGGAACCACAGTGCCCCTTGA
ACGGCGCTGCGTGCGCTTCATCGACAATTTCAGCGCCGGCACCCGCGGTGCCATATCAAC
AGAGCGCTTTCTGGAGGCCGGCTACGCGGTCATCTTCCTCACACGCACCGGCTCCCTCCA
GCCCTTCTCCCAAATGCTGCCCGCCGCCGACCCGCCGGAAGTCATAGCCCGCGTCGCCAT
GCTACAGCCGCCGCCGGCAGTAGCACCGGCTGAGGGCAGCCTGGACGGCAAAGCGGTGTC
TGCCAGCAGTAGCGGCGGCGCTGATGCTGACAACGTTGTGATCCGCCCGGAGCAGATGGC
GGCGTTGGCGCGGGTGCTGCGGGCGCAGCAGGCGTGCCGGGAGCACGGCACCCTGCTGAT
CATCAAGTATGAGACTAGTTCTCTCTCTCTCTATCGAGCGGCACAGGAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002937A_C01 KCC002937A_c01
         (771 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_563904.2| expressed protein [Arabidopsis thaliana] gi|264...    97  2e-19
ref|NP_195828.1| hypothetical protein [Arabidopsis thaliana] gi|...    94  2e-18
ref|XP_331482.1| hypothetical protein [Neurospora crassa] gi|289...    89  8e-17
ref|NP_497616.1| DNA/pantothenate metabolism flavoprotein, C ter...    87  3e-16
gb|AAF79631.1|AC025416_5 F5O11.7 [Arabidopsis thaliana]                87  4e-16

>ref|NP_563904.2| expressed protein [Arabidopsis thaliana]
           gi|26451224|dbj|BAC42714.1| unknown protein [Arabidopsis
           thaliana]
          Length = 317

 Score = 97.4 bits (241), Expect = 2e-19
 Identities = 55/110 (50%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
 Frame = +2

Query: 179 DAVEAFLADSPV--SGEAVADSVAAFIERHRSSGNTAFTGRAGTGLSRPIVVVTSGGTTV 352
           D + +F   SP   + E +  ++  FIE + S            G  R IV VTSGGTTV
Sbjct: 10  DEISSFFESSPPLKNKEEIVANLNQFIELNSSC----------QGGMRRIVCVTSGGTTV 59

Query: 353 PLERRCVRFIDNFSAGTRGAISTERFLEAGYAVIFLTRTGSLQPFSQMLP 502
           PLE+RCVR+IDNFS+G RGA STE F++AGYAVIFL R G+ QP+ + LP
Sbjct: 60  PLEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRYLP 109

>ref|NP_195828.1| hypothetical protein [Arabidopsis thaliana] gi|11358399|pir||T48229
           hypothetical protein T7H20.130 - Arabidopsis thaliana
           gi|7340682|emb|CAB82981.1| putative protein [Arabidopsis
           thaliana]
          Length = 270

 Score = 94.4 bits (233), Expect = 2e-18
 Identities = 45/63 (71%), Positives = 53/63 (83%)
 Frame = +2

Query: 314 RPIVVVTSGGTTVPLERRCVRFIDNFSAGTRGAISTERFLEAGYAVIFLTRTGSLQPFSQ 493
           R IV VTSGGTTVPLE+RCVR+IDNFS+G RGA STE F++AGYAVIFL R G+ QP+ +
Sbjct: 22  RRIVCVTSGGTTVPLEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCR 81

Query: 494 MLP 502
            LP
Sbjct: 82  SLP 84

>ref|XP_331482.1| hypothetical protein [Neurospora crassa] gi|28926704|gb|EAA35671.1|
           hypothetical protein [Neurospora crassa]
          Length = 440

 Score = 89.0 bits (219), Expect = 8e-17
 Identities = 48/81 (59%), Positives = 57/81 (70%)
 Frame = +2

Query: 251 IERHRSSGNTAFTGRAGTGLSRPIVVVTSGGTTVPLERRCVRFIDNFSAGTRGAISTERF 430
           +E+H           A  G  R +V++TSGGTTVPLE++ VRFIDNFSAGTRGA S E F
Sbjct: 32  LEKHVKQAKDFIDFHAKEG--RRLVLITSGGTTVPLEKQTVRFIDNFSAGTRGATSAEYF 89

Query: 431 LEAGYAVIFLTRTGSLQPFSQ 493
           LEAGYAV+FL R  SL PFS+
Sbjct: 90  LEAGYAVLFLHRQFSLLPFSR 110

>ref|NP_497616.1| DNA/pantothenate metabolism flavoprotein, C terminal (3D871)
           [Caenorhabditis elegans] gi|13559769|gb|AAK29973.1|
           Hypothetical protein Y71H2AM.6 [Caenorhabditis elegans]
          Length = 277

 Score = 87.0 bits (214), Expect = 3e-16
 Identities = 43/62 (69%), Positives = 48/62 (77%)
 Frame = +2

Query: 317 PIVVVTSGGTTVPLERRCVRFIDNFSAGTRGAISTERFLEAGYAVIFLTRTGSLQPFSQM 496
           PIV +TSGGT VPLE+  VRFIDNFS GTRGA S E FL AGYAVIF+ R  SL+PFS+ 
Sbjct: 18  PIVFITSGGTQVPLEKNTVRFIDNFSMGTRGAASAEYFLRAGYAVIFMHREESLKPFSRH 77

Query: 497 LP 502
            P
Sbjct: 78  FP 79

>gb|AAF79631.1|AC025416_5 F5O11.7 [Arabidopsis thaliana]
          Length = 455

 Score = 86.7 bits (213), Expect = 4e-16
 Identities = 53/109 (48%), Positives = 67/109 (60%), Gaps = 2/109 (1%)
 Frame = +2

Query: 179 DAVEAFLADSPV--SGEAVADSVAAFIERHRSSGNTAFTGRAGTGLSRPIVVVTSGGTTV 352
           D + +F   SP   + E +  ++  FIE + S            G  R IV VTSGGTTV
Sbjct: 114 DEISSFFESSPPLKNKEEIVANLNQFIELNSSC----------QGGMRRIVCVTSGGTTV 163

Query: 353 PLERRCVRFIDNFSAGTRGAISTERFLEAGYAVIFLTRTGSLQPFSQML 499
           PLE+RCVR+IDNFS+G RGA STE F++AGYAVIFL R      FS+M+
Sbjct: 164 PLEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRR-----FSEMM 207



EST assemble image


clone accession position
1 LCL059c02_r AV629464 1 380
2 LCL049g08_r AV628972 2 300
3 LC053a03_r AV622682 37 514
4 LCL020h09_r AV627090 314 772




Chlamydomonas reinhardtii
Kazusa DNA Research Institute