KCC002917A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002917A_C01 KCC002917A_c01
cattgaCCAGCTTGGTTCATTCAACCAATTCGAGGATTCAGCAGCTTGCAGAAGAGGCAA
AATATACTAGTTTGTTTCCACCCAGCGGCTCTGGTCGAAAGACGACTCATTCATTGCTTC
TTCAGCCCAATATAGCGTGTCCTTAATATCAAGGGCGCAAGAATGATGACAGTCCAAGAG
TTCATCGCGGCGATTGCTGACTCGCTGTTGCCCCGGCTGCCAGCGCTCCTCCAAGCATAC
TGGGTCCTCGCATCATCAGCAGTGCTTCTTACACTTCTGCCACTGCCTATCGTACCAAGC
GCGTTTAAGGCTGCTGTGAAGCTTGCGGCCTCGCGAGGCAAGCTTTGGCATGACCGGCCA
GATGCAAAGGCCCTGGGTTTCCTAAAGGACGTGTCCGTGCCGCAGCAGTACTTTGAGCAC
TTTCTACCTGGTGGGCTCGCTGGTCACCACGGTGCTGCTGCAGGTCTACATCTTCGTGTG
CACGCCCGACACGGACGGCAGCACGCTCAAGCGCGACTCCCTGCTGGCCCTGTTCCTGTT
CGAGCTGCACGTGCTGCGCCGCTACGGCGAGTCCAACTACGTCATGCACTACCCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002917A_C01 KCC002917A_c01
         (596 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83358.1| putative 3-oxo-5-alpha-steroid 4-dehydrogenase [...    33  0.018
emb|CAB46849.1| hypothetical protein [Canis familiaris]                40  0.025
emb|CAD41310.1| OSJNBa0020J04.15 [Oryza sativa (japonica cultiva...    33  0.029
ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177...    39  0.055
emb|CAC27587.1| keratin associated protein 9.4 [Homo sapiens]          39  0.072

>dbj|BAC83358.1| putative 3-oxo-5-alpha-steroid 4-dehydrogenase [Oryza sativa
           (japonica cultivar-group)]
          Length = 353

 Score = 32.7 bits (73), Expect(2) = 0.018
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +1

Query: 211 PRLPALLQAYWVLASSAVLLTLLPLPIVPSA--FKAAVKLAASRGKLWHDRP--DAKALG 378
           P L  LL   W+ A+  ++   LP+P        +  +   +SRGK     P   + +  
Sbjct: 7   PALQPLLCFAWIAATLPIIAAALPIPTAVGGHLLRRLLSAFSSRGKTVRPSPASSSGSSS 66

Query: 379 FLKDVSVPQQYFEHFLPGGL 438
                +VPQ+YF HF   G+
Sbjct: 67  SKAKFTVPQKYFMHFYVVGV 86

 Score = 26.9 bits (58), Expect(2) = 0.018
 Identities = 24/90 (26%), Positives = 31/90 (33%), Gaps = 33/90 (36%)
 Frame = +2

Query: 422 FYLVGSLVTTVLLQVYIFVCTPDTDGSTLKRDS--------------------------- 520
           FY+VG L TT+LL    F          L+  S                           
Sbjct: 81  FYVVGVLATTILLLAIWFYAYMKLTPLLLESSSYSTIFSHLVGSNSFSFGRVRSRTMGHK 140

Query: 521 ------LLALFLFELHVLRRYGESNYVMHY 592
                 + AL L E+ VLRR  E+ +V HY
Sbjct: 141 YRVWRTVFALLLMEVQVLRRLYETEHVFHY 170

>emb|CAB46849.1| hypothetical protein [Canis familiaris]
          Length = 70

 Score = 40.0 bits (92), Expect = 0.025
 Identities = 26/71 (36%), Positives = 35/71 (48%)
 Frame = +3

Query: 375 GFPKGRVRAAAVL*ALSTWWARWSPRCCCRSTSSCARPTRTAARSSATPCWPCSCSSCTC 554
           G P  R RAAA   A  +   R   R  C STS  +RP+ T       PC  C+C++   
Sbjct: 5   GRPGSRARAAAAAAAAGS--PRGRRRWRCASTSLSSRPSTTRG-----PCCSCACAAAPP 57

Query: 555 CAATASPTTSC 587
           C++T+S   SC
Sbjct: 58  CSSTSSWRPSC 68

>emb|CAD41310.1| OSJNBa0020J04.15 [Oryza sativa (japonica cultivar-group)]
          Length = 354

 Score = 32.7 bits (73), Expect(2) = 0.029
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +1

Query: 211 PRLPALLQAYWVLASSAVLLTLLPLPIVPSA--FKAAVKLAASRGKLWHDRP--DAKALG 378
           P L  LL   W+  +  +++  LP+P        +  +   +SRGK     P   + +  
Sbjct: 7   PALQPLLCLAWIATTLPIIVAALPIPAAAGGHLLRRLLSAFSSRGKTVRPSPASSSGSSS 66

Query: 379 FLKDVSVPQQYFEHFLPGGL 438
                +VPQ+YF HF   G+
Sbjct: 67  SKAKFTVPQKYFMHFYVVGV 86

 Score = 26.2 bits (56), Expect(2) = 0.029
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 33/90 (36%)
 Frame = +2

Query: 422 FYLVGSLVTTVLLQVYIFVC----TP----DTDGSTLKRD-------------------- 517
           FY+VG L TT+LL    F      TP     +  ST+                       
Sbjct: 81  FYVVGVLATTILLLAIWFYAYMKMTPLLPESSSYSTIASHLVGSNSFSFGRVHSRTMGHK 140

Query: 518 -----SLLALFLFELHVLRRYGESNYVMHY 592
                ++  L L E+ VLRR  E+ +V HY
Sbjct: 141 YHVWRTVFVLLLMEIQVLRRLYETEHVFHY 170

>ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177813|gb|EAA06779.2|
           ENSANGP00000001657 [Anopheles gambiae str. PEST]
          Length = 283

 Score = 38.9 bits (89), Expect = 0.055
 Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
 Frame = +3

Query: 453 CCCRSTSSCARP-TRTAARSSATPCWPCSCSSCTCCAATASPTTSCTT 593
           CC  S SSCA   +  A+ SS T C  C+ SS +C ++ +S  +SC++
Sbjct: 148 CCTSSCSSCASSCSSCASSSSTTSCSCCASSSSSCASSCSSCASSCSS 195

 Score = 37.0 bits (84), Expect = 0.21
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
 Frame = +3

Query: 456 CCRSTSSCARPTR-----TAARSSATPCWPCSCSSCTCCA------ATASPTTSCT 590
           C  STSSC+  T      T++ SS T    C  SSC+ CA      A++S TTSC+
Sbjct: 118 CSSSTSSCSSGTSSCRSGTSSCSSCTTSCSCCTSSCSSCASSCSSCASSSSTTSCS 173

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
 Frame = +3

Query: 456 CCRSTSSCARPTRTAARSSATPCWPC--SCSSCT--CCAATAS---PTTSCTT 593
           C   TSSC+  T + + S  T C  C  SCSS T  C +AT+S    TTSCT+
Sbjct: 20  CSSGTSSCSSSTSSGS-SGTTSCSSCTSSCSSGTSSCSSATSSCSSGTTSCTS 71

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
 Frame = +3

Query: 453 CCCRSTSSCARPTRTAARSSATPCWPCS--CSSCTCCAATASPTTSCTT 593
           CC  S+SSCA    + A S ++    CS   +S + CA++ S +TS ++
Sbjct: 174 CCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSSCASSCSSSTSSSS 222

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 26/123 (21%), Positives = 41/123 (33%)
 Frame = -1

Query: 563 SGAARAARTGTGPAGSRA*ACCRPCRACTRRCRPAAAPW*PASPPGRKCSKYCCGTDTSF 384
           S    + R+GT    S    C   C  CT  C   A+     +      S  CC + +S 
Sbjct: 126 SSGTSSCRSGTSSCSS----CTTSCSCCTSSCSSCASSCSSCASSSSTTSCSCCASSSSS 181

Query: 383 RKPRAFASGRSCQSLPREAASFTAALNALGTIGSGRSVRSTADDARTQYAWRSAGSRGNS 204
                 +   SC S     +S        GT  S     S +    +  +  ++ S G +
Sbjct: 182 CASSCSSCASSCSSCASSCSS--------GTTSSSSCASSCSSSTSSSSSGTTSCSSGTT 233

Query: 203 ESA 195
            S+
Sbjct: 234 SSS 236

>emb|CAC27587.1| keratin associated protein 9.4 [Homo sapiens]
          Length = 154

 Score = 38.5 bits (88), Expect = 0.072
 Identities = 23/60 (38%), Positives = 30/60 (49%), Gaps = 9/60 (15%)
 Frame = +3

Query: 444 SPRC---CCRST---SSCARPTRTAARSSATPCWPCSCSSCTCCAATASPT---TSCTTP 596
           SP C   CCR+T   ++C +PT T    S+TPC   SC   +CC     PT    +C  P
Sbjct: 6   SPCCQPTCCRTTCCRTTCWKPT-TVTTCSSTPCCQPSCCVSSCCQPCCRPTCCQNTCCQP 64



EST assemble image


clone accession position
1 LC046g07_r AV622223 1 499
2 LCL031a09_r AV627718 7 278
3 LC063d08_r AV623412 81 597




Chlamydomonas reinhardtii
Kazusa DNA Research Institute