KCC002892A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002892A_C01 KCC002892A_c01
GCGAGATTTGAGTCGACAGCGTCTGCTATACTAATCAGCGCGTTGCCTGAAACAGATAGC
GACAACTTCACTTCATACCTTTGCGCTCGTTTAACCGAAGGAACTTTCAAGCACTAGCTT
AAGCCTGCTGAATAACTATTCCCTAGACACAACATCTGCCCACACATAGCTTCAACCAGC
GGACGCAGCAGGATGACCATCGCACAGAAGTTGCCAGCGCTTTCGGCAGTCGCGAACGCG
GTATTAAAATCGCCTGAGGGAGCGGAGGTGGTTGCCAAGACGCTTTGGGCGTCGCAGCCA
GTCGCTGTGCTGGTGCTCCGACGACCAGGCTGCGTGCTATGTCGCGACGAGGCCCAGAGG
CTGTGGGCGCTCAAGCCCGAGTTCGACAAGCTCGGCGTGGGCCTGGTGTGCGTGGTGCAC
GAATGGATTCAGCGCGAGATTGACGCCTTCGCCCCCGCCTTCTGGCCCGGGCCGCTCTTC
CATGACACCTCCAAGTTCTTCTACGCAGCCCTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002892A_C01 KCC002892A_c01
         (513 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_081740.2| RIKEN cDNA 5730469M10 [Mus musculus] gi|2638333...    75  6e-13
ref|XP_341407.1| similar to RIKEN cDNA 5730469M10 [Rattus norveg...    74  8e-13
dbj|BAC11627.1| unnamed protein product [Homo sapiens]                 68  6e-11
gb|AAH05871.2| Unknown (protein for MGC:4248) [Homo sapiens]           68  6e-11
gb|AAQ89418.1| SFLQ611 [Homo sapiens]                                  68  6e-11

>ref|NP_081740.2| RIKEN cDNA 5730469M10 [Mus musculus] gi|26383338|dbj|BAB30875.2|
           unnamed protein product [Mus musculus]
           gi|34785297|gb|AAH56635.1| RIKEN cDNA 5730469M10 [Mus
           musculus]
          Length = 218

 Score = 74.7 bits (182), Expect = 6e-13
 Identities = 36/77 (46%), Positives = 49/77 (62%)
 Frame = +1

Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
           AK LW      ++ +RRPGC LCR EA  L +LKP+ D+LGV L  VV E ++RE++ F 
Sbjct: 55  AKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEQVKREVEDFQ 114

Query: 454 PAFWPGPLFHDTSKFFY 504
           P ++ G +F D  K FY
Sbjct: 115 P-YFKGEIFLDEKKKFY 130

>ref|XP_341407.1| similar to RIKEN cDNA 5730469M10 [Rattus norvegicus]
          Length = 353

 Score = 74.3 bits (181), Expect = 8e-13
 Identities = 36/77 (46%), Positives = 49/77 (62%)
 Frame = +1

Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
           AK LW      ++ +RRPGC LCR EA  L +LKP+ D+LGV L  VV E ++RE++ F 
Sbjct: 190 AKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEKVKREVEDFQ 249

Query: 454 PAFWPGPLFHDTSKFFY 504
           P ++ G +F D  K FY
Sbjct: 250 P-YFKGEIFLDEKKKFY 265

>dbj|BAC11627.1| unnamed protein product [Homo sapiens]
          Length = 218

 Score = 68.2 bits (165), Expect = 6e-11
 Identities = 35/77 (45%), Positives = 46/77 (59%)
 Frame = +1

Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
           AK LW      ++ +RRPGC LCR+EA  L +LK   D+LGV L  VV E I+ E+  F 
Sbjct: 55  AKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQ 114

Query: 454 PAFWPGPLFHDTSKFFY 504
           P ++ G +F D  K FY
Sbjct: 115 P-YFKGEIFLDEKKKFY 130

>gb|AAH05871.2| Unknown (protein for MGC:4248) [Homo sapiens]
          Length = 218

 Score = 68.2 bits (165), Expect = 6e-11
 Identities = 35/77 (45%), Positives = 46/77 (59%)
 Frame = +1

Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
           AK LW      ++ +RRPGC LCR+EA  L +LK   D+LGV L  VV E I+ E+  F 
Sbjct: 55  AKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQ 114

Query: 454 PAFWPGPLFHDTSKFFY 504
           P ++ G +F D  K FY
Sbjct: 115 P-YFKGEIFLDEKKKFY 130

>gb|AAQ89418.1| SFLQ611 [Homo sapiens]
          Length = 229

 Score = 68.2 bits (165), Expect = 6e-11
 Identities = 35/77 (45%), Positives = 46/77 (59%)
 Frame = +1

Query: 274 AKTLWASQPVAVLVLRRPGCVLCRDEAQRLWALKPEFDKLGVGLVCVVHEWIQREIDAFA 453
           AK LW      ++ +RRPGC LCR+EA  L +LK   D+LGV L  VV E I+ E+  F 
Sbjct: 66  AKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQ 125

Query: 454 PAFWPGPLFHDTSKFFY 504
           P ++ G +F D  K FY
Sbjct: 126 P-YFKGEIFLDEKKKFY 141



EST assemble image


clone accession position
1 LC064c08_r AV623474 1 609
2 MX231f03_r BP090955 13 415
3 MX211d08_r BP089651 32 456
4 MX013d04_r BP086635 79 468
5 LC089c11_r AV625210 88 593
6 LC038b11_r AV621591 115 524
7 MX213e02_r BP089760 154 463




Chlamydomonas reinhardtii
Kazusa DNA Research Institute