KCC002863A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002863A_C01 KCC002863A_c01
tgaactttcatcaagCTGCTTGCCCACTTCAACCATGCTGGCTCGCTCTCTTGCTCGCCC
TTCGTCCGCCTTCGGGCGCGCCGTTGTCGCCCGCCGGCTGCACGTCAGCTGCCCTGCCAT
GCGCCAGGTGCCTGTCCCCCAGGACGTGATGCCTAAGCAAGCCCAGGAGCTGCTGCAGGA
GGATTATAAGTACTTGGACGTGCGCACCACGGAGGAGTATGCGGGCGGTCATGCACCCGC
TGCGGTGAACGTGCCGGTGGTCAACTTCGGGCCGGGCGGCATGGTGCCCAACCCCGGCTT
CCTGCAGGCGGTGGAGGCCGCCTTCCCAGACAAGCAGGAGCGGCTGGTGGTGGGCTGCAA
GTCGGGGCGCCGTTCCCTGATGGCCATTGACCTGCTGTCCCAGGCGGGCTACTGCGAGCT
GGTGAACCTGGCAGGCGGCTTCGACCTATGGGCCGGCCAGGGGCTGCCGGTGGTGCGCTA
ATGGGACCACAGCGTGGAATGGGGATTTCCTCACAGTCTACGTTGGTCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002863A_C01 KCC002863A_c01
         (531 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T10180 senescence-associated protein din1, dark-inducible -...   103  2e-21
gb|AAF61174.1|AF245222_1 OP1 [Cucumis sativus]                        100  9e-21
dbj|BAA88985.2| Ntdin [Nicotiana tabacum]                              99  3e-20
sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 gi|74886...    99  3e-20
ref|NP_851278.1| senescence-associated protein [Arabidopsis thal...    97  1e-19

>pir||T10180 senescence-associated protein din1, dark-inducible - radish
           gi|2190012|dbj|BAA20356.1| din1 [Raphanus sativus]
          Length = 182

 Score =  103 bits (256), Expect = 2e-21
 Identities = 65/153 (42%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
 Frame = +2

Query: 20  LPTSTMLARSLA-RPSSAFG-RAVVARRLHVSCPAMRQVPVPQDVMPKQAQELLQEDYKY 193
           LP +T    S+A R +S F  R V   R +V+  A R   VP  V  + A+EL Q  YKY
Sbjct: 32  LPKATRRVVSVADRQNSNFRWRKVTTGRANVAAEAAR---VPTSVPVRVARELAQAGYKY 88

Query: 194 LDVRTTEEYAGGHAPAAVNVPVVNFGPGGMVPNPGFLQAVEAAFPDKQERLVVGCKSGRR 373
           LDVRT +E++ GH  +A+NVP +     GMV NP FL+ V + F  K + +++GC+SG R
Sbjct: 89  LDVRTPDEFSIGHPCSAINVPYMYRVGSGMVKNPSFLRQVSSHF-RKHDEIIIGCESGER 147

Query: 374 SLMAIDLLSQAGYCELVNLAGGFDLWAGQGLPV 472
           SLMA   L  AG+  + ++AGG+  W    LPV
Sbjct: 148 SLMASTELLTAGFTGVTDIAGGYVAWTENELPV 180

>gb|AAF61174.1|AF245222_1 OP1 [Cucumis sativus]
          Length = 150

 Score =  100 bits (250), Expect = 9e-21
 Identities = 53/113 (46%), Positives = 72/113 (62%)
 Frame = +2

Query: 134 VPQDVMPKQAQELLQEDYKYLDVRTTEEYAGGHAPAAVNVPVVNFGPGGMVPNPGFLQAV 313
           VP  V  + A ELLQ   +YLDVRT EEY+ GHAP A+N+P +     GM  NP FL  V
Sbjct: 37  VPTSVPVRVALELLQAGQRYLDVRTPEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEV 96

Query: 314 EAAFPDKQERLVVGCKSGRRSLMAIDLLSQAGYCELVNLAGGFDLWAGQGLPV 472
            A +  K + ++VGC SG+RSLMA   L  +GY  + ++AGG++ W+  GLP+
Sbjct: 97  -AIYFRKDDEIIVGCLSGKRSLMAAADLLASGYNYVTDIAGGYEAWSRNGLPM 148

>dbj|BAA88985.2| Ntdin [Nicotiana tabacum]
          Length = 185

 Score = 99.4 bits (246), Expect = 3e-20
 Identities = 50/112 (44%), Positives = 69/112 (60%)
 Frame = +2

Query: 134 VPQDVMPKQAQELLQEDYKYLDVRTTEEYAGGHAPAAVNVPVVNFGPGGMVPNPGFLQAV 313
           VP  V  + A ELLQ  ++YLDVRT EE++ GHAP A+N+P +     GM  NP FL+ V
Sbjct: 72  VPTSVPVRVALELLQAGHRYLDVRTAEEFSDGHAPGAINIPYMFRIGSGMTKNPNFLEEV 131

Query: 314 EAAFPDKQERLVVGCKSGRRSLMAIDLLSQAGYCELVNLAGGFDLWAGQGLP 469
              F  K + ++VGC+ G+RS MA   L  AG+  + ++AGG+  W   GLP
Sbjct: 132 LERF-GKDDEIIVGCQLGKRSFMATSDLLAAGFTGVTDIAGGYAAWTENGLP 182

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 gi|7488607|pir||T10192
           senescence-associated protein din1, dark-inducible -
           radish gi|169690|gb|AAA33867.1| din1
          Length = 183

 Score = 99.4 bits (246), Expect = 3e-20
 Identities = 63/153 (41%), Positives = 89/153 (57%), Gaps = 2/153 (1%)
 Frame = +2

Query: 20  LPTSTMLARSLA-RPSSAFG-RAVVARRLHVSCPAMRQVPVPQDVMPKQAQELLQEDYKY 193
           LP +T    S+A R +S F  R V   R +V+  A  +VP    V  + A+EL Q  YK+
Sbjct: 32  LPKATRRVVSVADRQNSNFRWRKVTTGRANVAAEAAARVPTSVPV--RVARELAQAGYKH 89

Query: 194 LDVRTTEEYAGGHAPAAVNVPVVNFGPGGMVPNPGFLQAVEAAFPDKQERLVVGCKSGRR 373
           LDVRT +E++ GH   A+NVP +     GMV NP FL+ V + F  K + +++GC+SG R
Sbjct: 90  LDVRTPDEFSIGHPSRAINVPYMYRVGSGMVKNPSFLRQVSSHF-RKHDEIIIGCESGER 148

Query: 374 SLMAIDLLSQAGYCELVNLAGGFDLWAGQGLPV 472
           SLMA   L  AG+  + ++AGG+  W    LPV
Sbjct: 149 SLMASTELLTAGFTGVTDIAGGYVPWTENELPV 181

>ref|NP_851278.1| senescence-associated protein [Arabidopsis thaliana]
           gi|10177119|dbj|BAB10409.1| senescence-associated
           protein sen1-like protein; ketoconazole resistance
           protein-like [Arabidopsis thaliana]
           gi|15146322|gb|AAK83644.1| AT5g66040/K2A18_11
           [Arabidopsis thaliana] gi|21536991|gb|AAM61332.1|
           senescence-associated protein [Arabidopsis thaliana]
           gi|23507795|gb|AAN38701.1| At5g66040/K2A18_11
           [Arabidopsis thaliana]
          Length = 120

 Score = 97.4 bits (241), Expect = 1e-19
 Identities = 49/112 (43%), Positives = 69/112 (60%)
 Frame = +2

Query: 134 VPQDVMPKQAQELLQEDYKYLDVRTTEEYAGGHAPAAVNVPVVNFGPGGMVPNPGFLQAV 313
           VP  V    A +LL   ++YLDVRT EE++ GHA  A+NVP +N G  GM  NP FL+ V
Sbjct: 7   VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query: 314 EAAFPDKQERLVVGCKSGRRSLMAIDLLSQAGYCELVNLAGGFDLWAGQGLP 469
            + F  + + ++VGC+SG RS+ A   L  AG+  + ++ GG+  WA  GLP
Sbjct: 67  SSHF-GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLP 117



EST assemble image


clone accession position
1 MX221g08_r BP090303 1 290
2 LC027c02_r AV620816 16 531




Chlamydomonas reinhardtii
Kazusa DNA Research Institute