KCC002854A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002854A_C01 KCC002854A_c01
atAACACATACACATTGTATCAAGCCAAGTAGGGCAGAACCAAGTTGGACAGAAGCACCT
CACGCTGCAGACAGCAACTATGAAGAGCAAACGAGATAGAGAGGAACCTTGTTTTATCTG
CAACCACTATCATGATGTGGAGAACGGAGAGCCGTGCACGGTCTGCGGGCACGTCATGTC
TCAGGCGGAGCGGAAGCAACTGGAGCCGAGCGTGCTGCCCACCGCTGTCATCCCCGGCAG
CCTGTACCTGGGCAGCTATGACACTGCCTCACGCTCCGAGCTGCTCCGGGCCATGGGAAT
AACACATATTCTCAACACGTGGCCCAGCAACGCGGAGCTGTTCAAAAACAGCTTCAAGTA
CCACACCGTGACCTCCACGCCGGTGGACTTCCAGGAGTGCCACGACTTCCTAGACATGGT
CCTCAACAAGGAGCAGAAGGTGCTGGTGTACTGCATGACGGGAGTGTCCAGATCACCGTC
GGTGGTGATTGCCTACCTGATGAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002854A_C01 KCC002854A_c01
         (505 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO42283.1| putative protein phosphatase [Arabidopsis thalian...   143  1e-33
ref|NP_178534.1| protein phosphatase -related [Arabidopsis thali...   143  1e-33
ref|NP_189003.1| dual-specificity protein phosphatase [Arabidops...    66  3e-10
dbj|BAB02780.1| dual-specificity protein phosphatase-like protei...    66  3e-10
ref|XP_230039.1| similar to dual-specificity phosphatase SKRP1 [...    66  3e-10

>gb|AAO42283.1| putative protein phosphatase [Arabidopsis thaliana]
           gi|28973409|gb|AAO64029.1| putative protein phosphatase
           [Arabidopsis thaliana]
          Length = 257

 Score =  143 bits (360), Expect = 1e-33
 Identities = 72/144 (50%), Positives = 93/144 (64%), Gaps = 5/144 (3%)
 Frame = +2

Query: 89  KRDREEPCFICNHYHDVENGEPCTVCGHVMSQAER----KQLEPSVLPTAVIPGSLYLGS 256
           KR+RE PC IC HYH  E GE C VCGH M  +      +Q+  S  P+ ++P  LYLGS
Sbjct: 3   KRERENPCSICGHYHKYEEGEVCGVCGHCMPVSSDTVAPQQVHVSAFPSEILPEFLYLGS 62

Query: 257 YDTASRSELLRAMGITHILNTWPSNAELFKNSFKYHTVTSTPV-DFQECHDFLDMVLNKE 433
           YD ASRSELL+  GI+ +LNT P    L++NSF YH + +  V  F +   FLD     +
Sbjct: 63  YDNASRSELLKTQGISRVLNTVPMCQNLYRNSFTYHGLDNEKVLQFDDAIKFLDQCEKDK 122

Query: 434 QKVLVYCMTGVSRSPSVVIAYLMK 505
            +VLV+CM+G SRSP+VV+AYLMK
Sbjct: 123 ARVLVHCMSGKSRSPAVVVAYLMK 146

>ref|NP_178534.1| protein phosphatase -related [Arabidopsis thaliana]
           gi|25411090|pir||G84458 probable protein phosphatase
           [imported] - Arabidopsis thaliana
           gi|4587597|gb|AAD25825.1| putative protein phosphatase
           [Arabidopsis thaliana]
          Length = 283

 Score =  143 bits (360), Expect = 1e-33
 Identities = 72/144 (50%), Positives = 93/144 (64%), Gaps = 5/144 (3%)
 Frame = +2

Query: 89  KRDREEPCFICNHYHDVENGEPCTVCGHVMSQAER----KQLEPSVLPTAVIPGSLYLGS 256
           KR+RE PC IC HYH  E GE C VCGH M  +      +Q+  S  P+ ++P  LYLGS
Sbjct: 3   KRERENPCSICGHYHKYEEGEVCGVCGHCMPVSSDTVAPQQVHVSAFPSEILPEFLYLGS 62

Query: 257 YDTASRSELLRAMGITHILNTWPSNAELFKNSFKYHTVTSTPV-DFQECHDFLDMVLNKE 433
           YD ASRSELL+  GI+ +LNT P    L++NSF YH + +  V  F +   FLD     +
Sbjct: 63  YDNASRSELLKTQGISRVLNTVPMCQNLYRNSFTYHGLDNEKVLQFDDAIKFLDQCEKDK 122

Query: 434 QKVLVYCMTGVSRSPSVVIAYLMK 505
            +VLV+CM+G SRSP+VV+AYLMK
Sbjct: 123 ARVLVHCMSGKSRSPAVVVAYLMK 146

>ref|NP_189003.1| dual-specificity protein phosphatase [Arabidopsis thaliana]
           gi|4150963|emb|CAA77232.1| DsPTP1 protein [Arabidopsis
           thaliana]
          Length = 198

 Score = 65.9 bits (159), Expect = 3e-10
 Identities = 38/101 (37%), Positives = 53/101 (51%), Gaps = 7/101 (6%)
 Frame = +2

Query: 224 AVIPGSLYLGSYDTASRSELLRAMGITHILNTWPSNAELFKNSFKYHTV-------TSTP 382
           ++I   LYLGS   AS   +L++  +THIL    S      + F Y  V       T+  
Sbjct: 52  SLIEQGLYLGSVAAASNKNVLKSYNVTHILTVASSLRPAHPDDFVYKVVRVVDKEDTNLE 111

Query: 383 VDFQECHDFLDMVLNKEQKVLVYCMTGVSRSPSVVIAYLMK 505
           + F EC DF+D    +   VLV+C  G SRS ++V+AYLMK
Sbjct: 112 MYFDECVDFIDEAKRQGGSVLVHCFVGKSRSVTIVVAYLMK 152

>dbj|BAB02780.1| dual-specificity protein phosphatase-like protein [Arabidopsis
           thaliana]
          Length = 198

 Score = 65.9 bits (159), Expect = 3e-10
 Identities = 38/101 (37%), Positives = 53/101 (51%), Gaps = 7/101 (6%)
 Frame = +2

Query: 224 AVIPGSLYLGSYDTASRSELLRAMGITHILNTWPSNAELFKNSFKYHTV-------TSTP 382
           ++I   LYLGS   AS   +L++  +THIL    S      + F Y  V       T+  
Sbjct: 52  SLIEQGLYLGSVAAASNKNVLKSYNVTHILTVASSLRPAHPDDFVYKVVRVVDKEDTNLE 111

Query: 383 VDFQECHDFLDMVLNKEQKVLVYCMTGVSRSPSVVIAYLMK 505
           + F EC DF+D    +   VLV+C  G SRS ++V+AYLMK
Sbjct: 112 MYFDECVDFIDEAKRQGGSVLVHCFVGKSRSVTIVVAYLMK 152

>ref|XP_230039.1| similar to dual-specificity phosphatase SKRP1 [Rattus norvegicus]
          Length = 220

 Score = 65.9 bits (159), Expect = 3e-10
 Identities = 41/103 (39%), Positives = 54/103 (51%), Gaps = 7/103 (6%)
 Frame = +2

Query: 215 LPTAVIPGSLYLGSYDTASRSELLRAMGITHILNTWPSNAELFKNSFKYHTVTSTPVD-- 388
           L   VI   L LGS D A   ELLR   +THILN       +F + F Y T++   V   
Sbjct: 63  LQVGVIKPWLLLGSQDAAHDLELLRQHKVTHILNVAYGVENVFLSEFTYKTISILDVPET 122

Query: 389 -----FQECHDFLDMVLNKEQKVLVYCMTGVSRSPSVVIAYLM 502
                F EC +F++    K+  VLV+C  GVSR+ +VVI +LM
Sbjct: 123 NILSYFPECFEFIEQAKLKDGVVLVHCNAGVSRAAAVVIGFLM 165



EST assemble image


clone accession position
1 LCL060e04_r AV629536 1 434
2 LCL001c10_r AV626030 3 505
3 LC025a12_r AV620656 30 225




Chlamydomonas reinhardtii
Kazusa DNA Research Institute