KCC002823A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002823A_C01 KCC002823A_c01
CAGCAGGGGCAAATTACATGCAATGGCTGATGTGGTCATCAGCCTCATCAGCTCATGAGC
CGGCTCAGGGCTGCAAGAGCAAGAATGCACACACCACGGCCCGTCGCGCATTCTGTGCAG
TGGTTGGGTCCGGTGGCTCACGAGAAATCAGTCTCCACGCCCACGTGACCGCCCGACCGC
ACTCTGGGTGCTCGGGAAACCAGTGCCCGTGACCCACGCCCCACCGCACCCGACACAGCT
AGCACTCGGACGCCGGTGCGTCGTGGGAGCTGGGCTGCTACCGGCTTAGCCTGCGTCGCC
CTGCATCCTCCGCCCCGACAGGTCCCAATGCCCCTCCCTATAGCACAGCCCACATCCCTG
CCATGCCTCCTGCACGTCCGTCTATCTCCTCCCTACAGCTCCTTCCCCCGCCCCTGCTGC
TGCCTGCTACCGCTGCTGCCGCTGCTGGCGCCTGCGACTCCCTCTCACGAGGGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002823A_C01 KCC002823A_c01
         (474 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_731673.1| Calphotin CG4795-PA [Drosophila melanogaster] g...    43  0.002
ref|NP_731674.1| Calphotin CG4795-PB [Drosophila melanogaster] g...    43  0.002
gb|AAL13544.1| GH08002p [Drosophila melanogaster]                      43  0.002
ref|ZP_00061549.1| COG2730: Endoglucanase [Clostridium thermocel...    42  0.005
pir||A47283 calphotin - fruit fly (Drosophila melanogaster) gi|1...    41  0.008

>ref|NP_731673.1| Calphotin CG4795-PA [Drosophila melanogaster]
           gi|7299569|gb|AAF54755.1| CG4795-PA [Drosophila
           melanogaster]
          Length = 842

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
 Frame = +1

Query: 40  QPHQLMSRLRAARARMHTPRPVAHSVQWLGPVAHEKSVS-----TPT*PPDRTLGARETS 204
           +P  + S + A  A   TP  VA  VQ + P A   + +     TP  PP      +  +
Sbjct: 2   EPGTIPSPVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPAT 61

Query: 205 ARDPRPTAPDTASTRTPVRRGSWAATGLACVALHPPPRQVPMPLPIAQPTSLPCLLHVRL 384
              P P AP  A++  PV     A+     VA   PP   P+  P      +P  +   +
Sbjct: 62  VTIPAP-APIAAASVAPV-----ASVAPPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPV 115

Query: 385 SPPYSSFPRPCCCLLPLLPLLA 450
           +PP ++ P P   +    P++A
Sbjct: 116 APPVAATPTPVAPIPVAAPVIA 137

>ref|NP_731674.1| Calphotin CG4795-PB [Drosophila melanogaster]
           gi|7299568|gb|AAF54754.1| CG4795-PB [Drosophila
           melanogaster]
          Length = 864

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
 Frame = +1

Query: 40  QPHQLMSRLRAARARMHTPRPVAHSVQWLGPVAHEKSVS-----TPT*PPDRTLGARETS 204
           +P  + S + A  A   TP  VA  VQ + P A   + +     TP  PP      +  +
Sbjct: 2   EPGTIPSPVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPAT 61

Query: 205 ARDPRPTAPDTASTRTPVRRGSWAATGLACVALHPPPRQVPMPLPIAQPTSLPCLLHVRL 384
              P P AP  A++  PV     A+     VA   PP   P+  P      +P  +   +
Sbjct: 62  VTIPAP-APIAAASVAPV-----ASVAPPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPV 115

Query: 385 SPPYSSFPRPCCCLLPLLPLLA 450
           +PP ++ P P   +    P++A
Sbjct: 116 APPVAATPTPVAPIPVAAPVIA 137

>gb|AAL13544.1| GH08002p [Drosophila melanogaster]
          Length = 864

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
 Frame = +1

Query: 40  QPHQLMSRLRAARARMHTPRPVAHSVQWLGPVAHEKSVS-----TPT*PPDRTLGARETS 204
           +P  + S + A  A   TP  VA  VQ + P A   + +     TP  PP      +  +
Sbjct: 2   EPGTIPSPVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPAT 61

Query: 205 ARDPRPTAPDTASTRTPVRRGSWAATGLACVALHPPPRQVPMPLPIAQPTSLPCLLHVRL 384
              P P AP  A++  PV     A+     VA   PP   P+  P      +P  +   +
Sbjct: 62  VTIPAP-APIAAASVAPV-----ASVAPPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPV 115

Query: 385 SPPYSSFPRPCCCLLPLLPLLA 450
           +PP ++ P P   +    P++A
Sbjct: 116 APPVAATPTPVAPIPVAAPVIA 137

>ref|ZP_00061549.1| COG2730: Endoglucanase [Clostridium thermocellum ATCC 27405]
          Length = 1013

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +1

Query: 91  TPRPVAHSVQWLGPVAHEKSVSTPT*PPDRTLGARETSARDPRPTA---PDTASTRTPVR 261
           TP P   S     P       STPT  P  T  +  T   +P PT+   P+ + + TPV 
Sbjct: 593 TPTPTPSSTPTSTPTPEPSPTSTPTPEPSPT--STPTPEPEPEPTSTPTPELSPSSTPVP 650

Query: 262 RGSWAATGLACVALHPPPRQVPMPLPIAQPTSLPCL 369
             +   T     A  P P   P+P PI  PT  P +
Sbjct: 651 TPTPTPTPAPNPAPEPVPISTPVPEPILIPTPTPTM 686

 Score = 35.4 bits (80), Expect = 0.34
 Identities = 32/128 (25%), Positives = 41/128 (32%), Gaps = 3/128 (2%)
 Frame = +1

Query: 91  TPRPVAHSVQWLGPVAHEKSVSTPT*PPDRTLGARETSARDPRPTA---PDTASTRTPVR 261
           +P P         P        TPT  P  +     T   +P PT+   P+ + T TP  
Sbjct: 569 SPTPTPSPTPSPTPTPSPTPSPTPTPTPTPSSTPTSTPTPEPSPTSTPTPEPSPTSTPTP 628

Query: 262 RGSWAATGLACVALHPPPRQVPMPLPIAQPTSLPCLLHVRLSPPYSSFPRPCCCLLPLLP 441
                 T      L P    VP P P   P   P    V +S P    P P     P   
Sbjct: 629 EPEPEPTSTPTPELSPSSTPVPTPTPTPTPAPNPAPEPVPISTP---VPEPILIPTPTPT 685

Query: 442 LLAPATPS 465
           +    TP+
Sbjct: 686 MTPMPTPT 693

>pir||A47283 calphotin - fruit fly (Drosophila melanogaster)
           gi|157072|gb|AAA28420.1| calphotin
          Length = 873

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 31/127 (24%), Positives = 52/127 (40%)
 Frame = +1

Query: 70  AARARMHTPRPVAHSVQWLGPVAHEKSVSTPT*PPDRTLGARETSARDPRPTAPDTASTR 249
           AA  ++ +P  VA +   + P     +  TP  PP      +  +   P P AP  A++ 
Sbjct: 24  AAPVQVVSPAAVAVAPAVVAPAPAAPTAVTPVAPPPTLASVQPATVTVPAP-APIAAASV 82

Query: 250 TPVRRGSWAATGLACVALHPPPRQVPMPLPIAQPTSLPCLLHVRLSPPYSSFPRPCCCLL 429
            PV     A+     VA   PP   P+  P      +P  +   ++PP ++ P P   + 
Sbjct: 83  APV-----ASVAPPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIP 137

Query: 430 PLLPLLA 450
              P++A
Sbjct: 138 VAAPVIA 144



EST assemble image


clone accession position
1 LC016e09_r AV620029 1 477
2 LC022h10_r AV620497 11 552
3 LC040d01_r AV621739 16 538




Chlamydomonas reinhardtii
Kazusa DNA Research Institute