Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002802A_C01 KCC002802A_c01
(529 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_004860.2| vacuolar protein sorting factor 4B; suppressor ... 229 2e-59
sp|O75351|SKD1_HUMAN SKD1 protein (Vacuolar sorting protein 4b) ... 229 2e-59
gb|AAF17203.1|AF112215_1 SKD1 protein [Homo sapiens] 228 5e-59
gb|AAL75948.1|AF132747_1 SKD2 protein [Homo sapiens] 228 5e-59
ref|NP_037377.1| vacuolar protein sorting factor 4A; SKD1-homolo... 228 5e-59
>ref|NP_004860.2| vacuolar protein sorting factor 4B; suppressor of K+ transport
defect 1 [Homo sapiens]
gi|9885650|gb|AAG01471.1|AF282904_1 vacuolar protein
sorting factor 4B [Homo sapiens]
gi|11225485|gb|AAG33022.1|AF195514_1 VPS4-2 ATPase [Homo
sapiens] gi|24660055|gb|AAH39574.1| Vacuolar protein
sorting factor 4B [Homo sapiens]
Length = 444
Score = 229 bits (584), Expect = 2e-59
Identities = 109/172 (63%), Positives = 139/172 (80%), Gaps = 7/172 (4%)
Frame = +1
Query: 34 LARENAPSIIFIDEVDSLCSTRGDNESEAARRIKTQLMIEINGVGSNNSRVLVLGATNLP 213
LAREN PSIIFIDE+DSLC +R +NESEAARRIKT+ ++++ GVG +N +LVLGATN+P
Sbjct: 222 LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281
Query: 214 YNLDQAIRRRFDKRIYIPLPEEPARSQMFKIHLGDTPNNLTDDDYRELGRRTEGFSGSDI 393
+ LD AIRRRF+KRIYIPLPE AR+ MFK+HLG T N+LT+ D+RELGR+T+G+SG+DI
Sbjct: 282 WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADI 341
Query: 394 NVVVKDVLMQPIRLLREATHFKKVRGPDGG-------EAWEPCSPGDPGAQE 528
+++V+D LMQP+R ++ ATHFKKVRGP + PCSPGDPGA E
Sbjct: 342 SIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIE 393
>sp|O75351|SKD1_HUMAN SKD1 protein (Vacuolar sorting protein 4b)
gi|3329390|gb|AAC39874.1| SKD1 homolog [Homo sapiens]
Length = 444
Score = 229 bits (583), Expect = 2e-59
Identities = 109/172 (63%), Positives = 138/172 (79%), Gaps = 7/172 (4%)
Frame = +1
Query: 34 LARENAPSIIFIDEVDSLCSTRGDNESEAARRIKTQLMIEINGVGSNNSRVLVLGATNLP 213
LAREN PSIIFIDE+DSLC +R +NESEAARRIKT+ ++++ GVG +N +LVLGATN+P
Sbjct: 222 LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281
Query: 214 YNLDQAIRRRFDKRIYIPLPEEPARSQMFKIHLGDTPNNLTDDDYRELGRRTEGFSGSDI 393
+ LD AIRRRF+KRIYIPLPE AR+ MFK+HLG T N+LT+ D+RELGR+T+G+SG+DI
Sbjct: 282 WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADI 341
Query: 394 NVVVKDVLMQPIRLLREATHFKKVRGPDGG-------EAWEPCSPGDPGAQE 528
++V+D LMQP+R ++ ATHFKKVRGP + PCSPGDPGA E
Sbjct: 342 GIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIE 393
>gb|AAF17203.1|AF112215_1 SKD1 protein [Homo sapiens]
Length = 437
Score = 228 bits (580), Expect = 5e-59
Identities = 109/172 (63%), Positives = 138/172 (79%), Gaps = 7/172 (4%)
Frame = +1
Query: 34 LARENAPSIIFIDEVDSLCSTRGDNESEAARRIKTQLMIEINGVGSNNSRVLVLGATNLP 213
LAR++ PSIIFIDEVDSLC +R +NESEAARRIKT+ ++++ GVG+NN LVLGATN+P
Sbjct: 215 LARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIP 274
Query: 214 YNLDQAIRRRFDKRIYIPLPEEPARSQMFKIHLGDTPNNLTDDDYRELGRRTEGFSGSDI 393
+ LD AIRRRF+KRIYIPLPEE AR+QMF++HLG TP+NLTD + EL R+TEG+SG+DI
Sbjct: 275 WVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334
Query: 394 NVVVKDVLMQPIRLLREATHFKKVRGPDG-------GEAWEPCSPGDPGAQE 528
+++V+D LMQP+R ++ ATHFKKV GP + PCSPGDPGA E
Sbjct: 335 SIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAME 386
>gb|AAL75948.1|AF132747_1 SKD2 protein [Homo sapiens]
Length = 437
Score = 228 bits (580), Expect = 5e-59
Identities = 109/172 (63%), Positives = 138/172 (79%), Gaps = 7/172 (4%)
Frame = +1
Query: 34 LARENAPSIIFIDEVDSLCSTRGDNESEAARRIKTQLMIEINGVGSNNSRVLVLGATNLP 213
LAR++ PSIIFIDEVDSLC +R +NESEAARRIKT+ ++++ GVG+NN LVLGATN+P
Sbjct: 215 LARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIP 274
Query: 214 YNLDQAIRRRFDKRIYIPLPEEPARSQMFKIHLGDTPNNLTDDDYRELGRRTEGFSGSDI 393
+ LD AIRRRF+KRIYIPLPEE AR+QMF++HLG TP+NLTD + EL R+TEG+SG+DI
Sbjct: 275 WVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334
Query: 394 NVVVKDVLMQPIRLLREATHFKKVRGPDG-------GEAWEPCSPGDPGAQE 528
+++V+D LMQP+R ++ ATHFKKV GP + PCSPGDPGA E
Sbjct: 335 SIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAME 386
>ref|NP_037377.1| vacuolar protein sorting factor 4A; SKD1-homolog; vacuolar sorting
protein 4 [Homo sapiens]
gi|5732691|gb|AAD49227.1|AF159063_1 SKD1-homolog [Homo
sapiens] gi|9885648|gb|AAG01470.1|AF282903_1 vacuolar
protein sorting factor 4A [Homo sapiens]
gi|14028571|gb|AAK52408.1|AF255952_1 vacuolar protein
sorting VPS4-1 [Homo sapiens] gi|28837905|gb|AAH47932.1|
Vacuolar protein sorting factor 4A [Homo sapiens]
Length = 437
Score = 228 bits (580), Expect = 5e-59
Identities = 109/172 (63%), Positives = 138/172 (79%), Gaps = 7/172 (4%)
Frame = +1
Query: 34 LARENAPSIIFIDEVDSLCSTRGDNESEAARRIKTQLMIEINGVGSNNSRVLVLGATNLP 213
LAR++ PSIIFIDEVDSLC +R +NESEAARRIKT+ ++++ GVG+NN LVLGATN+P
Sbjct: 215 LARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIP 274
Query: 214 YNLDQAIRRRFDKRIYIPLPEEPARSQMFKIHLGDTPNNLTDDDYRELGRRTEGFSGSDI 393
+ LD AIRRRF+KRIYIPLPEE AR+QMF++HLG TP+NLTD + EL R+TEG+SG+DI
Sbjct: 275 WVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADI 334
Query: 394 NVVVKDVLMQPIRLLREATHFKKVRGPDG-------GEAWEPCSPGDPGAQE 528
+++V+D LMQP+R ++ ATHFKKV GP + PCSPGDPGA E
Sbjct: 335 SIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAME 386
