KCC002794A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002794A_C01 KCC002794A_c01
cataATGTGCTTCATCCTACTACTCTTTCACAACATATCCAGGAAGGCAACCGACTTCAA
CGCCAAGCGCACCACTTACGAGAAGACGACCGCAGCCGCCCGCGCTGTCAAGGACAAGAA
CCAGCCCAAGAATGAGCGTGGCTGGTACAAGAACGCATGGCGCAGCCAGTGGGGCAAGAT
GTGGGACGGCTACAAGCGCGACCCTGTGCGCTTCACGGCTGGCGAGAAGCAGACGCTGAC
GGAAGAGGAGGTCGGTCTTTGCAAGGAGCTTGAGTCTTTGCTGCCAAGCCGGGCTTCCGC
GAGCGTCAAGGACGCCAAGGTGTCCTACGGTGCCATCGACGCCGGGGGCCTTCTGGGACC
GCTGGCCAAGGCCTTGAGCGGCCTCTCTTCAAAGACCAAGCGCTCCTCTCTGGGGTCCAC
AGGCGCCGTCGACGTCGCCGCCGCACCCCAGCCCAGCCCGCCCATGCCCCCGCCCATGCC
CCCGAGCCATGCCCCAGTCCAGCTCAGGCGCCATCGACAAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002794A_C01 KCC002794A_c01
         (522 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87637.1| unnamed protein product [Homo sapiens]                 48  7e-05
gb|AAM08514.1|AC068654_16 Hypothetical protein [Oryza sativa] gi...    48  7e-05
emb|CAE04214.1| OSJNBa0011E07.23 [Oryza sativa (japonica cultiva...    47  1e-04
ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         47  1e-04
ref|NP_627889.1| putative oxidoreductase [Streptomyces coelicolo...    47  1e-04

>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
          Length = 286

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 59/169 (34%), Positives = 68/169 (39%), Gaps = 11/169 (6%)
 Frame = +3

Query: 39  PGRQPTSTPSAPLTRRRPQ-------PPALSRTRTSPRMSVAGTRTHGAASGARCGTATS 197
           P   PT TP      R P        PP  S  RT PR S   TRT   AS  R  +  S
Sbjct: 86  PTAPPTRTPPTASPARTPPTESPARTPPTASPARTPPRASP--TRTPPRASPRRTPSTAS 143

Query: 198 ATLCASRLARSRR*RKRRSVFARSLSLCCQAGLPRAS--RTP-RCPTVPSTPGAFWDRWP 368
            T    R A  RR   R S          +   PRAS  RTP R     + P A   R P
Sbjct: 144 PTRTPPR-ASPRRTPPRASPTRTPPRASPKRTPPRASPRRTPPRASPTRAPPRASPKRTP 202

Query: 369 RP*AASLQRPSAPLWGPQA-PSTSPPHPSPARPCPRPCPRAMPQSSSGA 512
            P A+  + P      P+A P+ +PP  SPAR  PR  P   P + S A
Sbjct: 203 -PTASPTRTP------PRASPTRTPPTESPARTPPRASPTRTPPTESPA 244

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 53/169 (31%), Positives = 62/169 (36%), Gaps = 11/169 (6%)
 Frame = +3

Query: 33  TYPGRQPTSTPSAPLTRRRPQ-------PPALSRTRTSPRMSVAGTRTHGAASGARCGTA 191
           T P   PT TP     RR P        PP  S  RT PR S   TRT   AS  R    
Sbjct: 120 TPPRASPTRTPPRASPRRTPSTASPTRTPPRASPRRTPPRASP--TRTPPRASPKRTPPR 177

Query: 192 TSATLCASRLARSRR*RKRRSVFARSLSLCCQAGLPRAS--RTPRCPTVPSTPGAFWDRW 365
            S      R + +R    R S      +       PRAS  RTP   +   TP       
Sbjct: 178 ASPRRTPPRASPTRA-PPRASPKRTPPTASPTRTPPRASPTRTPPTESPARTP------- 229

Query: 366 PRP*AASLQRPSAPLWGPQAPST--SPPHPSPARPCPRPCPRAMPQSSS 506
           PR          +P   P   ST  +PP  SP R  PR  P+  P ++S
Sbjct: 230 PRASPTRTPPTESPARTPSRASTRRTPPRASPTRTPPRASPKRTPPTAS 278

 Score = 40.0 bits (92), Expect = 0.018
 Identities = 43/153 (28%), Positives = 56/153 (36%), Gaps = 2/153 (1%)
 Frame = +3

Query: 54  TSTPSAPLTRRRP--QPPALSRTRTSPRMSVAGTRTHGAASGARCGTATSATLCASRLAR 227
           T++ + P TR  P   PP  S TRT PR S    RT   AS  R     S T   +R   
Sbjct: 24  TTSLTRPPTRASPTRMPPRASPTRTPPRASPR--RTPPRASPRRTPPRASLTRPPTRA-- 79

Query: 228 SRR*RKRRSVFARSLSLCCQAGLPRASRTPRCPTVPSTPGAFWDRWPRP*AASLQRPSAP 407
                                  P     P  P   + P A   R P   + +   P+A 
Sbjct: 80  -----------------------PPTRMPPTAPPTRTPPTASPARTPPTESPARTPPTA- 115

Query: 408 LWGPQAPSTSPPHPSPARPCPRPCPRAMPQSSS 506
                +P+ +PP  SP R  PR  PR  P ++S
Sbjct: 116 -----SPARTPPRASPTRTPPRASPRRTPSTAS 143

>gb|AAM08514.1|AC068654_16 Hypothetical protein [Oryza sativa] gi|31429824|gb|AAP51819.1|
           hypothetical protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 773

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 30/72 (41%), Positives = 33/72 (45%)
 Frame = +3

Query: 291 GLPRASRTPRCPTVPSTPGAFWDRWPRP*AASLQRPSAPLWGPQAPSTSPPHPSPARPCP 470
           G   ASR P  P  PS P       P P  A    P AP   P  P+ SPP P P  P P
Sbjct: 406 GRQAASRAPSPPAPPSPPAPSPPAPPPPPPAP--SPPAPPPPPPPPAPSPPAPPPPPPPP 463

Query: 471 RPCPRAMPQSSS 506
            PCP A P++ S
Sbjct: 464 PPCPPAPPKTRS 475

>emb|CAE04214.1| OSJNBa0011E07.23 [Oryza sativa (japonica cultivar-group)]
          Length = 547

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 27/64 (42%), Positives = 31/64 (48%)
 Frame = +3

Query: 315 PRCPTVPSTPGAFWDRWPRP*AASLQRPSAPLWGPQAPSTSPPHPSPARPCPRPCPRAMP 494
           P  P  PS+P       P P A     PS+P   P  P+ SPP P P RP P PCP A P
Sbjct: 104 PPPPPAPSSPAP-----PSPPA-----PSSPAPPPPPPAPSPPDPPPPRPAPPPCPPAPP 153

Query: 495 QSSS 506
            + S
Sbjct: 154 MTRS 157

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 55/168 (32%), Positives = 67/168 (39%), Gaps = 10/168 (5%)
 Frame = +3

Query: 33  TYPGRQPTSTPSAPLTRRRPQ-------PPALSRTRTSPRMSVAGTRTHGAASGARCGTA 191
           T P   P  TP     RR P        PP  S TRT P  S A  RT   AS AR  + 
Sbjct: 57  TPPRASPRRTPPRASPRRAPPRASPRRTPPTASPTRTPPTESPA--RTPPTASPARTPSR 114

Query: 192 TSATLCASRLARSRR*RKRRSVFARSLSLCCQAGLPRASRT---PRCPTVPSTPGAFWDR 362
            S      R + +R    R S          +   PRAS T   PR     + P A   R
Sbjct: 115 ASPRRTPPRASPTRT-PPRASPRRTPPRASPRRTPPRASPTRAPPRASPKRTPPRASPTR 173

Query: 363 WPRP*AASLQRPSAPLWGPQAPSTSPPHPSPARPCPRPCPRAMPQSSS 506
            P P A+  + P       ++P+ +PP  SPAR   R  PR MP  +S
Sbjct: 174 TP-PRASPTRTPPT-----ESPARTPPTASPARTPSRASPRRMPPRAS 215

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 53/165 (32%), Positives = 64/165 (38%), Gaps = 7/165 (4%)
 Frame = +3

Query: 33  TYPGRQPTSTPSAPLTRRRPQPPALSRTRTSPRMSVAGTRTHGAASGARCGTATSATLCA 212
           T P   P  TPS    RR P  P  S TRT PR S    RT   AS  R     S T   
Sbjct: 102 TPPTASPARTPSRASPRRTP--PRASPTRTPPRASPR--RTPPRASPRRTPPRASPTRAP 157

Query: 213 SRLARSRR*RKRRSVFARSLSLCCQAGLPRASRT---PRCPTVPSTPGAFWDRWPRP*AA 383
            R +  R                     PRAS T   PR     + P     R P P A+
Sbjct: 158 PRASPKRT-------------------PPRASPTRTPPRASPTRTPPTESPARTP-PTAS 197

Query: 384 SLQRPS--APLWGPQ--APSTSPPHPSPARPCPRPCPRAMPQSSS 506
             + PS  +P   P   +P+ +PP  SP R  PR  P+  P ++S
Sbjct: 198 PARTPSRASPRRMPPRASPTRTPPRASPTRTPPRASPKRTPPTAS 242

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 26/63 (41%), Positives = 31/63 (48%), Gaps = 3/63 (4%)
 Frame = +3

Query: 30  TTYPGRQP-TSTPSAPLTRRRPQ--PPALSRTRTSPRMSVAGTRTHGAASGARCGTATSA 200
           T  P R P T++P+   +R  P+  PP  S TRT PR S   TRT   AS  R     S 
Sbjct: 186 TESPARTPPTASPARTPSRASPRRMPPRASPTRTPPRAS--PTRTPPRASPKRTPPTASP 243

Query: 201 TLC 209
           T C
Sbjct: 244 TSC 246

 Score = 32.3 bits (72), Expect = 3.8
 Identities = 27/85 (31%), Positives = 38/85 (43%), Gaps = 2/85 (2%)
 Frame = -2

Query: 416 TPERSAWSLKRGRSRPWPAVPEGPRRRWHRRTPWRP*RSRKPGLAAKTQAPCKDRPPL-- 243
           +P R+      GR+ P  +    P R   RR P R    R P  A+ T+ P  + P    
Sbjct: 44  SPARTPPRASPGRTPPRASPRRTPPRASPRRAPPRASPRRTPPTASPTRTPPTESPARTP 103

Query: 242 PSASASRQP*SAQGRACSRPTSCPT 168
           P+AS +R P  A  R  + P + PT
Sbjct: 104 PTASPARTPSRASPRR-TPPRASPT 127

 Score = 31.6 bits (70), Expect = 6.5
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = -2

Query: 416 TPERSAWSLKRGRSRPWPAVPEGPRRRWHRRTPWRP*RSRKPGLAAKTQAPCKDRPPL-- 243
           +P R+       R+ P  +    P R   +RTP R   +R P  A+ T+ P  + P    
Sbjct: 134 SPRRTPPRASPRRTPPRASPTRAPPRASPKRTPPRASPTRTPPRASPTRTPPTESPARTP 193

Query: 242 PSASASRQP*SAQGRACSRPTSCPT 168
           P+AS +R P  A  R    P + PT
Sbjct: 194 PTASPARTPSRASPRRMP-PRASPT 217

>ref|NP_627889.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
           gi|7481123|pir||T36632 probable oxidoreductase -
           Streptomyces coelicolor gi|5019347|emb|CAB44400.1|
           putative oxidoreductase [Streptomyces coelicolor A3(2)]
          Length = 406

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 51/156 (32%), Positives = 62/156 (39%), Gaps = 2/156 (1%)
 Frame = +3

Query: 45  RQPTSTPSAPLTRRRPQPPALSRTRTS-PRMSVAGTRTHGAASGARCGTATSATLCASRL 221
           R    TP AP T   P P A  R  TS P    A   T G +   RC +A +AT+ +   
Sbjct: 222 RSSGGTPIAPSTPAAPAPQASHRWATSSPYRRCARPGTPGGSRRPRCSSAWTATVPSGPT 281

Query: 222 ARSRR*RKRRSVFARSLSLCCQAGLPRASRTPRCPTVPSTPGAFWDRWP-RP*AASLQRP 398
           AR RR  +     A +          R SRT R P+  +       RW  RP  +     
Sbjct: 282 ARGRRSTRSSGAPASA----------RRSRTWR-PSACAAGAGTSPRWARRPRTSHACTS 330

Query: 399 SAPLWGPQAPSTSPPHPSPARPCPRPCPRAMPQSSS 506
           SA   GP AP   P   S  RP  RP     P SS+
Sbjct: 331 SATATGP-APPPPPSSASGVRPATRPA--LSPNSST 363



EST assemble image


clone accession position
1 LC010c04_r AV619574 1 226
2 MX001a03_r BP086054 5 435
3 MX260d05_r BP092882 7 436
4 LC059f10_r AV623155 21 489
5 MX057a03_r BP088309 51 397
6 LC048a01_r AV622312 193 522




Chlamydomonas reinhardtii
Kazusa DNA Research Institute