KCC002791A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002791A_C01 KCC002791A_c01
CCCTTCTCACTGCACACAATAGAGCGATATGCAAGCTTTCCGTCGTTGGCCTGGCGGTGG
GACTTGCAACATCCGGAGAGCCGCGAGCTCCAGTAGTCCGCGCCCATGTTTCGTGCGTGT
GCGAGAAGTACCGGCATGTCCAACCGCTCGACGTGAGCTGTTGCGCACAACCGCGTCGCT
AGGTGCAGACGATGTTCAGACCGCGACTTCTTCCGCGCTTGACGCTGCGCAGACCTGGGA
GCGCCTGAGCCTTGTAACGCGGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCT
TGCTGCAAAGCTTCGAGACGAGCAGAAGACTCTATCCGACAGCCTGCCGCCCATACTCCA
GTACGCGCTGGGGCAGGTGGCGAAGCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGAC
CATCCTCAACCTTGGCGAGGCGGGTGAGCCCGCGGTGATCCCTGACCTGGCCTCCTGCCT
GTCCAACCCCGAGCTGGCAGACACCGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAA
CAAGGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTCGCCCGC
CACCTACGACAAGGCGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGT
GGAGGGCTACAACAAGCGGGCCACGGTCAACTACCTCATGGGCCGCCACCAGGCCAGCAT
CGACGACTGCAACGCCGTGCTGGGCATGCAGCCGTACCACTTCGGCGCGGCGTCGGGGCT
TGGGCTGTGCCTGCTGCAGATGTCGCGCTATGAGGAGGCGTTGGCGGCGTTTGAGGCGGC
CCTGGTGATCCACCCGGGCATGTCCAACATCCGGCGCTTCGTGGCGGACCTGCGAAGGCA
CGTCGCCACAGATGGCCAGGAGCCGGGCGCTGGCGGGGCGGCTTGGCAGCAGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002791A_C01 KCC002791A_c01
         (954 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00008986.1| COG0457: FOG: TPR repeat [Rhodopseudomonas pa...    81  2e-14
ref|ZP_00074119.1| COG0457: FOG: TPR repeat [Trichodesmium eryth...    81  2e-14
ref|NP_487277.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    79  1e-13
ref|NP_104839.1| hypothetical protein [Mesorhizobium loti] gi|14...    77  4e-13
ref|ZP_00109284.1| COG0457: FOG: TPR repeat [Nostoc punctiforme]       75  2e-12

>ref|ZP_00008986.1| COG0457: FOG: TPR repeat [Rhodopseudomonas palustris]
          Length = 280

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 44/136 (32%), Positives = 72/136 (52%)
 Frame = +2

Query: 497 ADTAEKAMWAIFMKNKDPRVNELMQEGCMYMRSPATYDKALGVFSQMIQLAPSYVEGYNK 676
           A   E  +WA++ +        LM    + M +   +D AL +   +++L P YVEG+N+
Sbjct: 141 AKHVEGRIWALWSQTTSDTTALLMARSKVAMDAKQ-FDVALKLLDAVVKLKPDYVEGWNR 199

Query: 677 RATVNYLMGRHQASIDDCNAVLGMQPYHFGAASGLGLCLLQMSRYEEALAAFEAALVIHP 856
           RAT+ YL   +  S++D   VL  +P HFGA +GLG+ + ++   + AL AF  AL ++P
Sbjct: 200 RATIYYLQNDYMHSLEDIEQVLAREPRHFGALAGLGMIMQELGDDKRALDAFRRALALNP 259

Query: 857 GMSNIRRFVADLRRHV 904
            +  +   V  L   V
Sbjct: 260 HLDKVPDLVKTLSEKV 275

>ref|ZP_00074119.1| COG0457: FOG: TPR repeat [Trichodesmium erythraeum IMS101]
          Length = 161

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 44/146 (30%), Positives = 76/146 (51%)
 Frame = +2

Query: 452 AVIPDLASCLSNPELADTAEKAMWAIFMKNKDPRVNELMQEGCMYMRSPATYDKALGVFS 631
           A++ DL    S+    + A   +W I+ + K     E ++    Y        +   + +
Sbjct: 13  ALLKDLQK--SDELTRNQATSELWRIWFEEKGVAGLEAIRRS-EYWLQVGEVQQGKEILN 69

Query: 632 QMIQLAPSYVEGYNKRATVNYLMGRHQASIDDCNAVLGMQPYHFGAASGLGLCLLQMSRY 811
           Q+I+  P + E +N+RA + Y +G ++ ++ DC  V+ + P+HFGA  GLGLC L +  Y
Sbjct: 70  QLIEDIPDFGEAWNRRAVLYYTLGHYRQAVKDCEMVVKLNPFHFGAWHGLGLCYLALEEY 129

Query: 812 EEALAAFEAALVIHPGMSNIRRFVAD 889
            EA+ AF+ AL I P     +RF+ +
Sbjct: 130 REAILAFKKALEIQPYSIQNQRFILE 155

>ref|NP_487277.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25533136|pir||AF2210
           hypothetical protein all3237 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17132332|dbj|BAB74936.1|
           ORF_ID:all3237~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 156

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 41/125 (32%), Positives = 68/125 (53%)
 Frame = +2

Query: 482 SNPELADTAEKAMWAIFMKNKDPRVNELMQEGCMYMRSPATYDKALGVFSQMIQLAPSYV 661
           S+  + + A K +W I+ + K     E + +    +       +A  + +Q+IQ  P + 
Sbjct: 16  SDALVREQATKKLWRIWFQQKGMYGLEKIDQS-QKLLDAGEITEAEVMLTQLIQEQPDFA 74

Query: 662 EGYNKRATVNYLMGRHQASIDDCNAVLGMQPYHFGAASGLGLCLLQMSRYEEALAAFEAA 841
           E +N+RA + Y MG +Q S+ DC  V+ + P HFGA  G+GLC   + +Y +A+ AF+ A
Sbjct: 75  EAWNRRAFLYYSMGEYQKSLADCQMVIQINPVHFGALHGIGLCYAALGKYAKAIKAFKRA 134

Query: 842 LVIHP 856
           L I P
Sbjct: 135 LEIQP 139

>ref|NP_104839.1| hypothetical protein [Mesorhizobium loti]
           gi|14024020|dbj|BAB50625.1| hypothetical protein
           [Mesorhizobium loti]
          Length = 202

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 38/104 (36%), Positives = 62/104 (59%)
 Frame = +2

Query: 605 YDKALGVFSQMIQLAPSYVEGYNKRATVNYLMGRHQASIDDCNAVLGMQPYHFGAASGLG 784
           +D AL +  Q++ L P+Y EG+N+RATV+++M  +  S+ D +  L ++P HFGA SGL 
Sbjct: 98  FDVALDLLDQVVTLQPTYAEGWNRRATVHFMMKNYGKSMSDIDHTLQLEPRHFGALSGLA 157

Query: 785 LCLLQMSRYEEALAAFEAALVIHPGMSNIRRFVADLRRHVATDG 916
             +      + AL A++  L I+P M + +  VA L   +A +G
Sbjct: 158 QIMALTGHKQSALEAWQKVLAIYPMMRSAQDQVATLSEELAGEG 201

>ref|ZP_00109284.1| COG0457: FOG: TPR repeat [Nostoc punctiforme]
          Length = 160

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 45/156 (28%), Positives = 77/156 (48%), Gaps = 2/156 (1%)
 Frame = +2

Query: 458 IPDLASCLSNPE--LADTAEKAMWAIFMKNKDPRVNELMQEGCMYMRSPATYDKALGVFS 631
           I  L   L NP+  + D A + +W I+ + K     E++      +       +A    +
Sbjct: 6   INSLLEELKNPDATVRDKATRKIWRIWFQQKGIYGLEIIDRS-QKLLDAGEIAEAETALT 64

Query: 632 QMIQLAPSYVEGYNKRATVNYLMGRHQASIDDCNAVLGMQPYHFGAASGLGLCLLQMSRY 811
            +I+  P + E +N+RA + Y +G +Q S+ DC  V+ + P HFGA  G+GLC   +  Y
Sbjct: 65  ALIKDQPDFAEAWNRRAFLYYSIGDYQKSLADCQMVVQINPIHFGALHGMGLCYAALGEY 124

Query: 812 EEALAAFEAALVIHPGMSNIRRFVADLRRHVATDGQ 919
            EA+ AF+ AL I P     ++ + +     + DG+
Sbjct: 125 GEAIRAFKRALEIQPYSLVNQKLILECTFRFSYDGR 160



EST assemble image


clone accession position
1 LC009b06_r AV619499 1 531
2 LC079e08_r AV624570 95 586
3 LC100f09_r AV625982 120 509
4 LC071a06_r AV623961 216 729
5 MXL023b06_r BP094445 609 1058




Chlamydomonas reinhardtii
Kazusa DNA Research Institute