KCC002789A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002789A_C01 KCC002789A_c01
ACTCCTTGGCCAACGTGTCTCTAAACTGTCACCAAACTGATTGATTGCCTCTGAGCAGCG
TTCACTACTTTGCGAGCACACATACACCTCATCGTCCTTGGTATTATTCAACGGGTGTTG
CAAGTGATAGATCTGCCAGACGGGGAGCGGAGCAGGCAGGGCTGCCAAGGAACACACGGC
GGGTGTGCCACCCACCTCGCAGCGCCCACGCCCACAGCAGGCCCGCGCGGGCTTCCTGAA
CTCAGCCAGCCTGGCACTTCTTAGCTCGGATATTTCTCATACTAGCTAGCTGGTCTCCAA
GCATGACAGGTGGCTCGGTGAGCCCCGCGGAGGTCCGGTCCGTGCTGCGCGCTGTGCTCC
GCGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002789A_C01 KCC002789A_c01
         (365 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_839487.1| hypothetical protein [Shigella flexneri 2a str....    33  1.0
ref|NP_312270.1| redox-responsive chaperonin Hsp33 [Escherichia ...    33  1.0
ref|NP_709173.1| orf, conserved hypothetical protein [Shigella f...    33  1.0
ref|NP_289940.1| orf, hypothetical protein [Escherichia coli O15...    33  1.0
pdb|1HW7|A Chain A, Hsp33, Heat Shock Protein With Redox-Regulat...    33  1.0

>ref|NP_839487.1| hypothetical protein [Shigella flexneri 2a str. 2457T]
           gi|30043578|gb|AAP19298.1| hypothetical protein S4343
           [Shigella flexneri 2a str. 2457T]
          Length = 289

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (50%)
 Frame = -3

Query: 168 LAALPAPLPVWQIYHLQHPLNNTKDDEVYVCSQSSERCSEAINQFGD 28
           L  LPA   +W++YH +        D  + C+ S ERC++A+    D
Sbjct: 200 LLTLPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADALKTLPD 246

>ref|NP_312270.1| redox-responsive chaperonin Hsp33 [Escherichia coli O157:H7]
           gi|3220017|sp|P45803|HSLO_ECOLI 33 kDa chaperonin (Heat
           shock protein 33) (HSP33) gi|25308239|pir||C91159
           redox-responsive chaperonin Hsp33 [imported] -
           Escherichia coli (strain O157:H7, substrain RIMD
           0509952) gi|13363717|dbj|BAB37666.1| redox-responsive
           chaperonin Hsp33 [Escherichia coli O157:H7]
          Length = 292

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (50%)
 Frame = -3

Query: 168 LAALPAPLPVWQIYHLQHPLNNTKDDEVYVCSQSSERCSEAINQFGD 28
           L  LPA   +W++YH +        D  + C+ S ERC++A+    D
Sbjct: 200 LLTLPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADALKTLPD 246

>ref|NP_709173.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
           gi|24053868|gb|AAN44880.1|AE015349_10 orf, conserved
           hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 291

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (50%)
 Frame = -3

Query: 168 LAALPAPLPVWQIYHLQHPLNNTKDDEVYVCSQSSERCSEAINQFGD 28
           L  LPA   +W++YH +        D  + C+ S ERC++A+    D
Sbjct: 202 LLTLPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADALKTLPD 248

>ref|NP_289940.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
           gi|16131278|ref|NP_417860.1| hypothetical protein
           [Escherichia coli K12] gi|26249996|ref|NP_756036.1| Heat
           shock protein 33 [Escherichia coli CFT073]
           gi|7465970|pir||D65135 hypothetical 32.8 kD protein in
           mrcA-pckA intergenic region - Escherichia coli (strain
           K-12) gi|25308250|pir||A86005 hypothetical protein yrfI
           [imported] - Escherichia coli  (strain O157:H7,
           substrain EDL933) gi|606335|gb|AAA58198.1| ORF_o294
           [Escherichia coli] gi|1789804|gb|AAC76426.1| orf,
           hypothetical protein [Escherichia coli K12]
           gi|12518027|gb|AAG58501.1|AE005562_4 orf, hypothetical
           protein [Escherichia coli O157:H7 EDL933]
           gi|26110425|gb|AAN82610.1|AE016768_28 Heat shock protein
           33 [Escherichia coli CFT073]
          Length = 294

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (50%)
 Frame = -3

Query: 168 LAALPAPLPVWQIYHLQHPLNNTKDDEVYVCSQSSERCSEAINQFGD 28
           L  LPA   +W++YH +        D  + C+ S ERC++A+    D
Sbjct: 202 LLTLPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADALKTLPD 248

>pdb|1HW7|A Chain A, Hsp33, Heat Shock Protein With Redox-Regulated Chaperone
           Activity
          Length = 255

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (50%)
 Frame = -3

Query: 168 LAALPAPLPVWQIYHLQHPLNNTKDDEVYVCSQSSERCSEAINQFGD 28
           L  LPA   +W++YH +        D  + C+ S ERC++A+    D
Sbjct: 202 LLTLPANEVLWRLYHEEEVTVYDPQDVEFKCTCSRERCADALKTLPD 248



EST assemble image


clone accession position
1 LC008g12_r AV619475 1 346
2 MX019e11_r BP086886 21 385




Chlamydomonas reinhardtii
Kazusa DNA Research Institute