KCC002783A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002783A_C01 KCC002783A_c01
ctccctcgcctcctccccctgttgcccgactgcccccctggcctccgctgcctgtcaaca
acgtgcctcctgcccccactGCCCGGAACACCACCTGGACTGCCCCCGCCGGCACCACTG
TCCGCACCTATGAGATCTTCGCCCCCTTCAAGGGCACTGGTGGCAGGAACACCGGCGTGT
CTGGCCGCACCGTGCAGTTCTGGCTGTGCCCCGCCCTGAAGGCCGCGCTGCAGGACCAGC
TGGGCCAGCCCGTGTCGGTCAAGCCCAACGTGAACGCCTCTATCTCCTGCACGGACTGGT
ATCAGGTCAAGAAGAAGGCCAAGGGTCTGTTCTACCGTATCACTGTGGCTGCCCAGCAGT
CTGCTCACGATGCTGTCATGGACTTCATCCTCTCTGGCGGCGACTTCGTGCGCCAGGCGC
GCCTGGTCTGCGGCTCCCAGATCCGCATTGGCGAGGCCGAGCCCCCGCGCCAGAAGCTCA
AGGCTGTGTTCCCCTCGCCGTTCGACCCCAAGGCTGCCGTCGACCCATACCTGTACCTGT
CGGGCAAGGCTGGTTCGCCCGGCGCTGGCGTCTGCATCGACAAGCTGCCCGTCTAAATCA
CAGATGATGCAGCAATAGCTAAGCGCAGCGTTGCGCTCAAGCTTGGCTTAGTGAGCGGGT
TAGGAGCTGTGACCAGCAGCCAGCTGGTGACGGCAGGTGTGTTGTGTGGGTGCACAGGCT
CAGCGCTCAGGCTTCGGTCTGTAGCGTCGGATCCAGCGTGAGCATCGTGCAGCCCTGGAG
CGAACGCATTGGATACTCGTGCGATTAATGCGGCGAGTTGAGGTGTTGATGACGACCGGA
GCGTGCTGGTGGGTTTGGGCTGTGTCTGCAGTGCTTGTTGCGACACGCCCACCTAGACTG
GCCAGGCGCCACTGATGAGGGAACCTAGGACGCTCAATTGTGCAGCGTGCGTGCGTGTAT
GACCACTCGTCAGGGATCAGGGGTAGGACACATTGGGCATGCGACCCGGATAGTCCGGCG
CAGTGCGGGTAGATGCAGGGTAAGAGTTCCGCATGTCTCTGTCCGATTGTTGGTCAGCAT
GCTGGACTGGTTAGAAGTTGTGAACTCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002783A_C01 KCC002783A_c01
         (1108 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87637.1| unnamed protein product [Homo sapiens]                 55  3e-06
ref|XP_331491.1| predicted protein [Neurospora crassa] gi|289267...    43  8e-06
ref|NP_567903.2| protein kinase family [Arabidopsis thaliana] gi...    45  1e-05
pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CA...    41  1e-05
gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]              42  2e-05

>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
          Length = 286

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 64/199 (32%), Positives = 82/199 (41%), Gaps = 14/199 (7%)
 Frame = +1

Query: 46  RCLSTTCLL-PPLPGTPPGLPPPA-PLSAPMRSSP---PSRALVAGTP--ACLAAPCSSG 204
           R L TT L  PP   +P  +PP A P   P R+SP   P RA    TP  A L  P +  
Sbjct: 20  RILYTTSLTRPPTRASPTRMPPRASPTRTPPRASPRRTPPRASPRRTPPRASLTRPPTRA 79

Query: 205 ---CAPP*RPRCRT-SWASPCRSSPT*TPLSPARTGIRSRRRPRVCSTVSLWLPSSLLTM 372
                PP  P  RT   ASP R+ PT +P     T   +R  PR   T +    S   T 
Sbjct: 80  PPTRMPPTAPPTRTPPTASPARTPPTESPARTPPTASPARTPPRASPTRTPPRASPRRTP 139

Query: 373 LSWTSSSLAATSCARRAWSAAPRSALARPSPRARSSRL---CSPRRSTPRLPSTHTCTCR 543
            + + +     +  RR     PR++  R  PRA   R     SPRR+ PR   T      
Sbjct: 140 STASPTRTPPRASPRR---TPPRASPTRTPPRASPKRTPPRASPRRTPPRASPTRAPPRA 196

Query: 544 ARLVRPALASASTSCPSKS 600
           +    P  AS + + P  S
Sbjct: 197 SPKRTPPTASPTRTPPRAS 215

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 54/181 (29%), Positives = 72/181 (38%), Gaps = 5/181 (2%)
 Frame = +1

Query: 73  PPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRTSWASP 252
           PP    P  +PP AP +    ++ P+R     +PA      S    PP     RT    P
Sbjct: 75  PPTRAPPTRMPPTAPPTRTPPTASPARTPPTESPARTPPTASPARTPPRASPTRT----P 130

Query: 253 CRSSPT*TP--LSPARTGIRS---RRRPRVCSTVSLWLPSSLLTMLSWTSSSLAATSCAR 417
            R+SP  TP   SP RT  R+   R  PR   T +    S   T            S  R
Sbjct: 131 PRASPRRTPSTASPTRTPPRASPRRTPPRASPTRTPPRASPKRTP--------PRASPRR 182

Query: 418 RAWSAAPRSALARPSPRARSSRLCSPRRSTPRLPSTHTCTCRARLVRPALASASTSCPSK 597
               A+P  A  R SP+ R+    SP R+ PR   T T    +    P  AS + + P++
Sbjct: 183 TPPRASPTRAPPRASPK-RTPPTASPTRTPPRASPTRTPPTESPARTPPRASPTRTPPTE 241

Query: 598 S 600
           S
Sbjct: 242 S 242

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
 Frame = +1

Query: 76  PLPGTPPGLPPPA-PLSAPMRSSP---PSRALVAGTPACLAAPCSSGCAPP*R-PRCRTS 240
           P   +P   PP A P   P R+SP   P RA    TP   +   +   A P R P   + 
Sbjct: 166 PPRASPKRTPPRASPRRTPPRASPTRAPPRASPKRTPPTASPTRTPPRASPTRTPPTESP 225

Query: 241 WASPCRSSPT*TP--LSPARTGIRSRRR---PRVCST 336
             +P R+SPT TP   SPART  R+  R   PR   T
Sbjct: 226 ARTPPRASPTRTPPTESPARTPSRASTRRTPPRASPT 262

>ref|XP_331491.1| predicted protein [Neurospora crassa] gi|28926713|gb|EAA35680.1|
           predicted protein [Neurospora crassa]
          Length = 283

 Score = 42.7 bits (99), Expect(2) = 8e-06
 Identities = 35/80 (43%), Positives = 37/80 (45%)
 Frame = +1

Query: 70  LPPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRTSWAS 249
           +PP     P  PPP P S P  SS PS A  A + A  A P SSG APP  P      AS
Sbjct: 126 VPPASSGGPSAPPPPPPSPPASSSAPS-APPASSGAPPAPPASSG-APPAPP------AS 177

Query: 250 PCRSSPT*TPLSPARTGIRS 309
               SP   P  PA TG  S
Sbjct: 178 SGSPSPPPPPHPPASTGAPS 197

 Score = 36.6 bits (83), Expect = 0.81
 Identities = 27/81 (33%), Positives = 38/81 (46%)
 Frame = +1

Query: 58  TTCLLPPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRT 237
           +T + P   GTPP  PPPA   +P    PP ++ V   PA    P +    PP  P   +
Sbjct: 95  STTVCPVSSGTPPPPPPPASSGSP---PPPPQSSV--PPASSGGPSAPPPPPPSPPASSS 149

Query: 238 SWASPCRSSPT*TPLSPARTG 300
           + ++P  SS    P  PA +G
Sbjct: 150 APSAPPASSGA-PPAPPASSG 169

 Score = 33.5 bits (75), Expect = 6.8
 Identities = 26/79 (32%), Positives = 33/79 (40%)
 Frame = +1

Query: 73  PPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRTSWASP 252
           PP P    G PP  P S+   S PP     A T A  A P S+  +P   P    +   P
Sbjct: 161 PPAPPASSGAPPAPPASSGSPSPPPPPHPPASTGAPSAPPASTQPSPS-NPASSAAPPPP 219

Query: 253 CRSSPT*TPLSPARTGIRS 309
             S P+ T   P+ +G  S
Sbjct: 220 HNSGPSAT--EPSASGSSS 236

 Score = 30.0 bits (66), Expect(2) = 8e-06
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   PSPPPPVARLPPWPPLPVNNVPPA 74
           P PPPP A     PP P ++VPPA
Sbjct: 106 PPPPPPPASSGSPPPPPQSSVPPA 129

>ref|NP_567903.2| protein kinase family [Arabidopsis thaliana] gi|7486419|pir||T04455
           hypothetical protein F4D11.90 - Arabidopsis thaliana
           gi|3063699|emb|CAA18590.1| putative protein [Arabidopsis
           thaliana] gi|7270175|emb|CAB79988.1| putative protein
           kinase [Arabidopsis thaliana]
          Length = 731

 Score = 44.7 bits (104), Expect(2) = 1e-05
 Identities = 55/184 (29%), Positives = 78/184 (41%), Gaps = 7/184 (3%)
 Frame = +1

Query: 70  LPPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRTSWAS 249
           LPP   +PP LP P PLSAP  S PP       +P   + P     +PP  P    S  S
Sbjct: 40  LPPPLSSPPPLPSPPPLSAPTASPPPLPVESPPSPPIESPPPPLLESPPPPPLESPSPPS 99

Query: 250 PCRSSPT*TPLSPARTGIRSRRRPRVCSTVSLWLPSSLLTMLSWTSSSLAATSCARRAWS 429
           P  S+P+ +P  P    + ++  P   S  S  +P      +S    SL + S      +
Sbjct: 100 PHVSAPSGSPPLPF---LPAKPSPPPSSPPSETVPPG--NTISPPPRSLPSESTPPVNTA 154

Query: 430 AAP------RSALARPS-PRARSSRLCSPRRSTPRLPSTHTCTCRARLVRPALASASTSC 588
           + P      R +  +PS P   +S   +P  +TP LP T +   +  L      S+ST  
Sbjct: 155 SPPPPSPPRRRSGPKPSFPPPINSSPPNPSPNTPSLPET-SPPPKPPLSTTPFPSSSTPP 213

Query: 589 PSKS 600
           P KS
Sbjct: 214 PKKS 217

 Score = 27.7 bits (60), Expect(2) = 1e-05
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 3  PSPPPPVARLPPWPPLPVNNVPPAP 77
          P+  PP   LPP   +P  + PPAP
Sbjct: 11 PATSPPAMSLPPADSVPDTSSPPAP 35

>pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CAA46283.1|
           extensin [Volvox carteri]
          Length = 464

 Score = 41.2 bits (95), Expect = 0.033
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +1

Query: 52  LSTTCLLPPLPGTPPGLPPPAPLSA---PMRSSPPSRALVAGTPACLAAPCSSGCAPP*R 222
           + TT   PP P      PPPA +S+   P   SPP R + + +P   A+P     +PP  
Sbjct: 216 VQTTPSPPPPPRVSTSPPPPARVSSSPPPATRSPPPRRITSPSPVLTASPPLPKTSPPPP 275

Query: 223 PRCRTSWASPCRSSPT*TP 279
           PR   S   P  S P   P
Sbjct: 276 PRVPPSPPPPVASPPPPPP 294

 Score = 37.7 bits (86), Expect(2) = 1e-05
 Identities = 25/70 (35%), Positives = 31/70 (43%), Gaps = 1/70 (1%)
 Frame = +1

Query: 73  PPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRTSWA-S 249
           PP P   P  PPP P+S+P    PP  +     P    +P      PP  P  R S +  
Sbjct: 292 PPPPRVSPSPPPPQPVSSPPPPPPPRPSPSPPPPRSSPSPPPPSPPPPSPPPPRPSPSPP 351

Query: 250 PCRSSPT*TP 279
           P RSSP+  P
Sbjct: 352 PPRSSPSPPP 361

 Score = 36.6 bits (83), Expect = 0.81
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = +3

Query: 3   PSPPPPVARLPPWPPLPVNNVPPAP 77
           PSPPPPVA  PP PP  V+  PP P
Sbjct: 280 PSPPPPVASPPPPPPPRVSPSPPPP 304

 Score = 35.0 bits (79), Expect(2) = 3e-04
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  PPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTP 174
           PP P  PP  PPPA  +A   S  PSR+   G P
Sbjct: 389 PPPPSPPPSPPPPATAAANPPSPAPSRSRAGGPP 422

 Score = 34.7 bits (78), Expect(2) = 1e-05
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +3

Query: 6   SPPPPVARLPPWPPLPVNNVPPAPTAR 86
           SPPPP  R+PP PP PV + PP P  R
Sbjct: 271 SPPPP-PRVPPSPPPPVASPPPPPPPR 296

 Score = 33.5 bits (75), Expect = 6.8
 Identities = 34/105 (32%), Positives = 42/105 (39%), Gaps = 6/105 (5%)
 Frame = +1

Query: 25  PDCPPGLRCLSTTCLLPPLPGTPPGLPPPAPLSAPMRSSP-PSRALVAGTPACLAA---- 189
           P  PP     S     PP P  PP  P P+P   P RSSP P   +V+  P    A    
Sbjct: 320 PSPPPPRSSPSPPPPSPPPPSPPP--PRPSPSPPPPRSSPSPPPPVVSPPPPPPRASPPP 377

Query: 190 -PCSSGCAPP*RPRCRTSWASPCRSSPT*TPLSPARTGIRSRRRP 321
            P SS   PP  P      + P  ++    P SPA +  R+   P
Sbjct: 378 PPASSPPPPPRPPPPSPPPSPPPPATAAANPPSPAPSRSRAGGPP 422

 Score = 32.3 bits (72), Expect(2) = 3e-04
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 3   PSPPPPVARLPPWPPLPVNNVPPAP 77
           PSP PP  R  P PP PV + PP P
Sbjct: 346 PSPSPPPPRSSPSPPPPVVSPPPPP 370

 Score = 32.0 bits (71), Expect(2) = 4.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
 Frame = +3

Query: 3   PSPPPPVARLPPWPPL------PVNNVPPAP 77
           PSPPPPV   PP PP       P ++ PP P
Sbjct: 357 PSPPPPVVSPPPPPPRASPPPPPASSPPPPP 387

 Score = 20.8 bits (42), Expect(2) = 4.6
 Identities = 11/34 (32%), Positives = 13/34 (37%)
 Frame = +1

Query: 73  PPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTP 174
           PPL   PP  PP      P    PP + +    P
Sbjct: 421 PPLGTRPPPPPPEDDAPPPDYYFPPPQDMSPPPP 454

>gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]
          Length = 1016

 Score = 41.6 bits (96), Expect(2) = 1e-04
 Identities = 43/135 (31%), Positives = 60/135 (43%), Gaps = 8/135 (5%)
 Frame = +1

Query: 82   PGTPPGLPPPAPLSAP---MRSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRTSWASP 252
            P TP  LPPPAP+S P   ++SSPP        PA +++P     +PP  P   +S   P
Sbjct: 866  PPTPKPLPPPAPVSLPPPEVKSSPP--------PAPISSPPPPAKSPP-PPAPMSSLPPP 916

Query: 253  CRSSPT*TPLSPARTGIRSRRRPRVCST--VSLWLPSSLLTMLSWTSSSLAATSCARRA- 423
             +S P   P+S     ++S   P   S+   +   P SL      +S   A TS   +  
Sbjct: 917  VKSPPPPAPVSSPPPPMKSPPPPAPISSPPPAPVKPPSLPPPAPVSSPPPAVTSAPPKKE 976

Query: 424  --WSAAPRSALARPS 462
               +A P  AL  PS
Sbjct: 977  EDSTAPPAEALPPPS 991

 Score = 39.7 bits (91), Expect(2) = 2e-05
 Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
 Frame = +1

Query: 73   PPLPGTPPGLPPPAPLSAP---MRSSPPSRALVAGTPACLAAP 192
            PP P  PP LPPPAP+S+P   + S+PP +   +  P   A P
Sbjct: 946  PPAPVKPPSLPPPAPVSSPPPAVTSAPPKKEEDSTAPPAEALP 988

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 47/171 (27%), Positives = 69/171 (39%), Gaps = 1/171 (0%)
 Frame = +1

Query: 16   PLLPDCPPGLRCLSTTCLLPPLPGTPPGLPPPAPLSAPMRSSPPSRALVAGTPACLAAPC 195
            P  P  PP    + T  L PP   +PP  P  +P  AP  SSP         PA +++P 
Sbjct: 707  PSTPSKPPPPSPVET--LPPPSKSSPPEEPVSSPPQAPKSSSP---------PAPVSSPP 755

Query: 196  SSGCAPP*RPRCRTSWASPCRSSPT*TPLSPARTGIRSRRRPRVCSTVSLWLPSSLLTML 375
                +PP  P      +SP  +  +  PL+P  +       P+V  T     P S     
Sbjct: 756  PLKSSPPPVPE-----SSPPPTPKSSPPLAPVSS------PPQVEKTSPPPAPVSSPPPT 804

Query: 376  SWTSSSLAATSCARRAWSAAPRSA-LARPSPRARSSRLCSPRRSTPRLPST 525
              +S  LA  S   +    +P  A ++ P P  +SS   +P  S P++  T
Sbjct: 805  PKSSPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSSPPLAPVSSPPQVEKT 855

 Score = 38.9 bits (89), Expect = 0.16
 Identities = 55/210 (26%), Positives = 81/210 (38%), Gaps = 41/210 (19%)
 Frame = +1

Query: 4    PRLLPLLPDCPPGLRCLSTTCLLPPLPG-TPPGLPPPA----------------PLSAPM 132
            P  +P L   PP    + T    PP+P  +PPG  PPA                P + P+
Sbjct: 464  PMRMPTLRS-PPADEYIPT----PPVPAKSPPGTSPPASRGAPPLQAQPPAASSPPATPV 518

Query: 133  RSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRTSWASP-CRSSPT*TPLSPARTGIRS 309
            +SSPP  A+V   PA   +P +   +PP  P    S   P  +S P   P++     ++S
Sbjct: 519  KSSPPPAAVVLPPPAKTPSPPAPVASPP--PEAPVSSPQPQVKSPPPPAPVASPPPPMKS 576

Query: 310  RRRP-RVCSTVSLWL-----------PSSLLT---MLSWTSS--------SLAATSCARR 420
               P RV S   L             P  L +    + W S+         +   S    
Sbjct: 577  PPPPARVASPPPLMKSPPPPAPVASPPQPLKSPPPPVLWLSTPSVKSPPPPVPVASPPPP 636

Query: 421  AWSAAPRSALARPSPRARSSRLCSPRRSTP 510
              S  P + ++ PSP  +   L +P +STP
Sbjct: 637  VKSPPPLAPVSSPSPPVKLPPLPAPGKSTP 666

 Score = 34.3 bits (77), Expect(2) = 0.002
 Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 6/78 (7%)
 Frame = +1

Query: 76   PLPGTPPGL---PPPAPLSAP---MRSSPPSRALVAGTPACLAAPCSSGCAPP*RPRCRT 237
            P+   PP +   PPPAP+S+P   M+S PP   + +  PA +  P     AP   P    
Sbjct: 909  PMSSLPPPVKSPPPPAPVSSPPPPMKSPPPPAPISSPPPAPVKPPSLPPPAPVSSPPPAV 968

Query: 238  SWASPCRSSPT*TPLSPA 291
            + A P +   +  P + A
Sbjct: 969  TSAPPKKEEDSTAPPAEA 986

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 32/102 (31%), Positives = 43/102 (41%), Gaps = 20/102 (19%)
 Frame = +1

Query: 22  LPDCPPGLRCLSTTCLLPPLPGTPPGLPP-------PAPLSAPMR----SSPPSRALV-- 162
           +P  PP +          P P TPP + P       P P  APMR     SPP+   +  
Sbjct: 422 VPGKPPSVPGKPAAPAPMPTPHTPPDVSPEPLPEPSPVPAPAPMRMPTLRSPPADEYIPT 481

Query: 163 ----AGTPACLAAPCSSGCAPP*R---PRCRTSWASPCRSSP 267
               A +P   + P S G APP +   P   +  A+P +SSP
Sbjct: 482 PPVPAKSPPGTSPPASRG-APPLQAQPPAASSPPATPVKSSP 522

 Score = 32.0 bits (71), Expect(2) = 2e-05
 Identities = 14/24 (58%), Positives = 19/24 (78%)
 Frame = +3

Query: 6   SPPPPVARLPPWPPLPVNNVPPAP 77
           SPPPP+ + PP PP P+++ PPAP
Sbjct: 928 SPPPPM-KSPP-PPAPISSPPPAP 949

 Score = 31.6 bits (70), Expect(2) = 0.58
 Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 2/42 (4%)
 Frame = +1

Query: 73   PPLPGTPPGLPPPAPLSA--PMRSSPPSRALVAGTPACLAAP 192
            PP P   P  PPPAP+S+  P   SPP  A V+  P  + +P
Sbjct: 897  PPPPAKSP--PPPAPMSSLPPPVKSPPPPAPVSSPPPPMKSP 936

 Score = 30.0 bits (66), Expect(2) = 0.002
 Identities = 12/22 (54%), Positives = 17/22 (76%)
 Frame = +3

Query: 6   SPPPPVARLPPWPPLPVNNVPP 71
           S PPP A+ PP PP P++++PP
Sbjct: 895 SSPPPPAKSPP-PPAPMSSLPP 915

 Score = 27.7 bits (60), Expect(2) = 0.96
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 25/114 (21%)
 Frame = +1

Query: 73   PPLPGTPPGL-------------PPPAPLSAPMR-----------SSPPSRALVAGTPAC 180
            PP P + P L             PPPAP+S+P             SSPP     +  PA 
Sbjct: 802  PPTPKSSPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSSPPLAPVSSPPQVEKTSPPPAP 861

Query: 181  LAAPCSSGCAPP*RPRCRTSWASP-CRSSPT*TPLSPARTGIRSRRRPRVCSTV 339
            +++P  +    P  P    S   P  +SSP   P+S      +S   P   S++
Sbjct: 862  VSSPPPT--PKPLPPPAPVSLPPPEVKSSPPPAPISSPPPPAKSPPPPAPMSSL 913

 Score = 27.3 bits (59), Expect(2) = 0.96
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   SPPPPVARLPPWPPLPVNNVPPAP 77
           S PP V +  P PP PV++ PP P
Sbjct: 783 SSPPQVEKTSP-PPAPVSSPPPTP 805

 Score = 27.3 bits (59), Expect(2) = 1e-04
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   SPPPPVARLPPWPPLPVNNVPPAP 77
           S PP V +  P PP PV++ PP P
Sbjct: 847 SSPPQVEKTSP-PPAPVSSPPPTP 869

 Score = 24.3 bits (51), Expect(2) = 0.58
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
 Frame = +3

Query: 9   PPPPVARLPPWP-----PLPVNNVPP 71
           PP PV+  PP P     P PV+  PP
Sbjct: 858 PPAPVSSPPPTPKPLPPPAPVSLPPP 883



EST assemble image


clone accession position
1 MX060b04_r BP088423 1 432
2 LC047c07_r AV622259 173 641
3 LC008c03_r AV619428 352 867
4 LC042h06_r AV621940 383 820
5 MXL058g04_r BP096440 637 1108




Chlamydomonas reinhardtii
Kazusa DNA Research Institute