KCC002782A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002782A_C01 KCC002782A_c01
agctgaacctgacggccaccgactatggcccgtacctggtcaacgaggcctcgcccatct
acaccgcgacgattgtggacCGCTGCACGCAAAAGCTGGTGAACGACTGGAACTACATGC
GCACCCAGGCCGATGAGAACCTGGCAATGTTCATGGACTACTGCACGTACGGTCACATGA
TTGATAACGTGGTGCTCATCGTGACGGGCACGCTACACGAGCGCGACGTGCAGGAGCTGC
TGGACAAGTGCCACCCGCTGGGCATGTTCGACTCCATAGCCACGCTGGCGGTGGCGCAGA
ACATGCGCGAGCTGTACCGGCTGGTGCTGGTGGACACGCCGCTGGCGCCCTACTTCTCCG
AGAACCTGACGCACGAGGACCTGGACGAGATGAACATCGAGATCATGCGCAACACGCTGT
ACAAGGCCTACCTGGACGACTTCGCGGCCTTTTGCCAGAAGCTGGGCAGCACCACGGCGG
AGATCATGGGCGACATGCTGGCGTTCGAGACCGACCGCCGCGCGCTGAACATCACGCTGA
ACTCGATCGGCACGGAGCTGACGCGCGACGACCGCAAGAAGCTGTACTCCAACTTCGGAC
TGCTGTACCCGCACGGCCACAACGAGCTGGCCATGGCGGAGGACTTCGACCAGATCCGCT
CCGCCATGGAGAAGGTGGCCGCCTACAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002782A_C01 KCC002782A_c01
         (688 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_189513.1| expressed protein [Arabidopsis thaliana] gi|125...   361  7e-99
ref|NP_189512.1| adenosine triphosphatase -related [Arabidopsis ...   358  4e-98
dbj|BAB89911.1| putative Vacuolar ATP synthase subunit d [Oryza ...   358  4e-98
gb|AAG40030.1|AF324679_1 AT3g28710 [Arabidopsis thaliana] gi|119...   357  1e-97
emb|CAD27914.1| putative vacuolar ATPase subunit d [Mesembryanth...   311  6e-84

>ref|NP_189513.1| expressed protein [Arabidopsis thaliana]
           gi|12585471|sp|Q9LHA4|V0D2_ARATH Probable vacuolar ATP
           synthase subunit d 2 (V-ATPase d subunit 2) (Vacuolar
           proton pump d subunit 2)
           gi|16226844|gb|AAL16278.1|AF428348_1 AT3g28715/MZN14_21
           [Arabidopsis thaliana] gi|17065118|gb|AAL32713.1|
           Unknown protein [Arabidopsis thaliana]
           gi|23197892|gb|AAN15473.1| Unknown protein [Arabidopsis
           thaliana]
          Length = 351

 Score =  361 bits (926), Expect = 7e-99
 Identities = 174/228 (76%), Positives = 199/228 (86%)
 Frame = +3

Query: 3   LNLTATDYGPYLVNEASPIYTATIVDRCTQKLVNDWNYMRTQADENLAMFMDYCTYGHMI 182
           ++L+AT YGPYL NE SP++T TIV++CT KLV+D+ +M  QA E ++ F++Y  YGHMI
Sbjct: 47  MHLSATKYGPYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMI 106

Query: 183 DNVVLIVTGTLHERDVQELLDKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE 362
           DNVVLIVTGTLHERDVQEL++KCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE
Sbjct: 107 DNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE 166

Query: 363 NLTHEDLDEMNIEIMRNTLYKAYLDDFAAFCQKLGSTTAEIMGDMLAFETDRRALNITLN 542
            LT EDLD+MNIEIMRNTLYKAYL+DF  FCQKLG  TAEIM D+LAFE DRRA+NIT+N
Sbjct: 167 CLTSEDLDDMNIEIMRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITIN 226

Query: 543 SIGTELTRDDRKKLYSNFGLLYPHGHNELAMAEDFDQIRSAMEKVAAY 686
           SIGTELTR+DRKKLYSNFGLLYP+GH ELA+ ED DQ+R  MEK   Y
Sbjct: 227 SIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPY 274

>ref|NP_189512.1| adenosine triphosphatase -related [Arabidopsis thaliana]
           gi|12230764|sp|Q9LJI5|V0D1_ARATH Probable vacuolar ATP
           synthase subunit d 1 (V-ATPase d subunit 1) (Vacuolar
           proton pump d subunit 1) gi|9294284|dbj|BAB02186.1|
           vacuolar ATP synthase subunit AC39 [Arabidopsis
           thaliana] gi|14532480|gb|AAK63968.1| AT3g28710/MZN14_20
           [Arabidopsis thaliana] gi|18655357|gb|AAL76134.1|
           AT3g28710/MZN14_20 [Arabidopsis thaliana]
           gi|23297057|gb|AAN13080.1| putative adenosine
           triphosphatase [Arabidopsis thaliana]
          Length = 351

 Score =  358 bits (919), Expect = 4e-98
 Identities = 173/228 (75%), Positives = 198/228 (85%)
 Frame = +3

Query: 3   LNLTATDYGPYLVNEASPIYTATIVDRCTQKLVNDWNYMRTQADENLAMFMDYCTYGHMI 182
           ++L+AT YG YL NE SP++T TIV++CT KLV+D+ +M  QA E ++ F++Y  YGHMI
Sbjct: 47  MHLSATKYGSYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMI 106

Query: 183 DNVVLIVTGTLHERDVQELLDKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE 362
           DNVVLIVTGTLHERDVQEL++KCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE
Sbjct: 107 DNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE 166

Query: 363 NLTHEDLDEMNIEIMRNTLYKAYLDDFAAFCQKLGSTTAEIMGDMLAFETDRRALNITLN 542
            LT EDLD+MNIEIMRNTLYKAYL+DF  FCQKLG  TAEIM D+LAFE DRRA+NIT+N
Sbjct: 167 CLTSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITIN 226

Query: 543 SIGTELTRDDRKKLYSNFGLLYPHGHNELAMAEDFDQIRSAMEKVAAY 686
           SIGTELTR+DRKKLYSNFGLLYP+GH ELA+ ED DQ+R  MEK   Y
Sbjct: 227 SIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPY 274

>dbj|BAB89911.1| putative Vacuolar ATP synthase subunit d [Oryza sativa (japonica
           cultivar-group)]
          Length = 351

 Score =  358 bits (919), Expect = 4e-98
 Identities = 172/228 (75%), Positives = 199/228 (86%)
 Frame = +3

Query: 3   LNLTATDYGPYLVNEASPIYTATIVDRCTQKLVNDWNYMRTQADENLAMFMDYCTYGHMI 182
           ++LTAT+YGPYL NE SP++T TIV++CT KLV+++ +M  QA E L+ F+ Y TYGHMI
Sbjct: 47  MHLTATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMMCQATEPLSTFLQYITYGHMI 106

Query: 183 DNVVLIVTGTLHERDVQELLDKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE 362
           DNVVLIVTGTLHERDV ELL+KCHPLGMFDSIA+LAVAQNMRELYRLVLVDTPLAPYFSE
Sbjct: 107 DNVVLIVTGTLHERDVNELLEKCHPLGMFDSIASLAVAQNMRELYRLVLVDTPLAPYFSE 166

Query: 363 NLTHEDLDEMNIEIMRNTLYKAYLDDFAAFCQKLGSTTAEIMGDMLAFETDRRALNITLN 542
            +T EDLD+MNIEIMRNTLYKAYL+DF  FC+KLG  TAEIM D+L+FE DRRA+NIT+N
Sbjct: 167 CITSEDLDDMNIEIMRNTLYKAYLEDFYKFCEKLGGATAEIMCDLLSFEADRRAVNITIN 226

Query: 543 SIGTELTRDDRKKLYSNFGLLYPHGHNELAMAEDFDQIRSAMEKVAAY 686
           SIGTELTRDDR+KLYSNFGLLYP+GH ELA+ ED DQ+R  MEK   Y
Sbjct: 227 SIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDVDQVRGVMEKYPPY 274

>gb|AAG40030.1|AF324679_1 AT3g28710 [Arabidopsis thaliana]
           gi|11993863|gb|AAG42915.1|AF327534_1 putative adenosine
           triphosphatase [Arabidopsis thaliana]
          Length = 351

 Score =  357 bits (915), Expect = 1e-97
 Identities = 172/228 (75%), Positives = 198/228 (86%)
 Frame = +3

Query: 3   LNLTATDYGPYLVNEASPIYTATIVDRCTQKLVNDWNYMRTQADENLAMFMDYCTYGHMI 182
           ++L+AT YG YL NE SP++T TIV++CT KLV+D+ +M  QA E ++ F++Y  YGHMI
Sbjct: 47  MHLSATKYGSYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMI 106

Query: 183 DNVVLIVTGTLHERDVQELLDKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE 362
           DNVVLIVTGTLHERDVQEL++KCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE
Sbjct: 107 DNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE 166

Query: 363 NLTHEDLDEMNIEIMRNTLYKAYLDDFAAFCQKLGSTTAEIMGDMLAFETDRRALNITLN 542
            LT EDLD++NIEIMRNTLYKAYL+DF  FCQKLG  TAEIM D+LAFE DRRA+NIT+N
Sbjct: 167 CLTSEDLDDINIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITIN 226

Query: 543 SIGTELTRDDRKKLYSNFGLLYPHGHNELAMAEDFDQIRSAMEKVAAY 686
           SIGTELTR+DRKKLYSNFGLLYP+GH ELA+ ED DQ+R  MEK   Y
Sbjct: 227 SIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPY 274

>emb|CAD27914.1| putative vacuolar ATPase subunit d [Mesembryanthemum crystallinum]
          Length = 353

 Score =  311 bits (797), Expect = 6e-84
 Identities = 156/229 (68%), Positives = 183/229 (79%), Gaps = 1/229 (0%)
 Frame = +3

Query: 3   LNLTATDYGPYLVNEASPIYTATIVDRCTQKLVNDWNYMRTQADENLAMFMDYCTYGHMI 182
           ++L+ATDYGPYL NE SP++T T+V++CT KL +++ +M  QA E L+ F++Y TYGHMI
Sbjct: 47  MHLSATDYGPYLQNEPSPLHTTTLVEKCTLKLGDEYKHMLCQATEPLSTFLEYITYGHMI 106

Query: 183 DNVVLIVTGTLHERDVQELLDKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSE 362
           DNVVLI TGTLHERDVQELL+KCHPLGMFD IATLAVAQNMRELYRLVLVDTPLAPYFSE
Sbjct: 107 DNVVLIGTGTLHERDVQELLEKCHPLGMFDRIATLAVAQNMRELYRLVLVDTPLAPYFSE 166

Query: 363 NLTHEDLDEMNIEIMRNTLYKAYLDDFAAFCQKLGSTTAEIMGDMLAFETDRRALNITLN 542
            +T EDLD+MNIEIMRNTLYKAYL+DF  FCQKLG  T + M D+LAFE DRRA NIT+N
Sbjct: 167 CITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGWATGQNMSDLLAFEADRRADNITIN 226

Query: 543 SIGTELTRD-DRKKLYSNFGLLYPHGHNELAMAEDFDQIRSAMEKVAAY 686
           S G +L  + DR KL+S FGLLYP+G  +LA  ED    R   EK   Y
Sbjct: 227 SFGPDLAPEGDRTKLHSTFGLLYPYGREKLAGCEDIYHARGEPEKDPPY 275



EST assemble image


clone accession position
1 LC054a05_r AV622750 1 549
2 LC008b04_r AV619421 156 688




Chlamydomonas reinhardtii
Kazusa DNA Research Institute