KCC002773A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002773A_C01 KCC002773A_c01
CTCATACTCGCTTGCCCTCACCCTCTGTGACCGGCCATAAAACCGGCGACAAACTTGTTG
ATGCTCATGCTCACCGGCCTTCCCACAACTTCGCGGCCCGTAAAAGCAGTTACAGCTTGC
CCCCTTCGCGCTTTCAGCGTGAACGCTCGCCGAGCCGGGAGTTTGACTCCATCTGCAACA
CTTGCGCAGTTGCAAGAAGACGCGATGCCGCCGACTAACCGTGTGGCAGACCCTGAGGAT
GCGGAGAATACAAAGAACTCGGTGTGCCCTCGCATCAATATGATCCCGGTCAAGTACACC
AAGACCATCCACTTTGTCCGCCACGGGCAAGGGTTCCACAACGTGGCAGGACAAATAAAC
CACGACAACTACAAGAGCTGGGAGCACTTTGACGCGCATCTGACGGAGCTGGGCTGGCGG
CAGGCAGAGAACCTGGGCAAGCACGTGGCTGCCACCCGGCTGCCTGTTGAGCTGGTGGTG
GTGGCGCCGCTGCAGAGGGCCATGGAGACGGCGGTAGCGGCGTTCGGCAAACACGAGGAC
CCAGCAGTGGCGGCAGCAGCGGCCTCTGGAGCTGCGAACGGGAACGGGAACGGCGTGTCG
TCGTCCTCGGGGGACGACGTGCCGCTGCTGATGGTGGCGCAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002773A_C01 KCC002773A_c01
         (643 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_179320.1| expressed protein [Arabidopsis thaliana] gi|253...   108  7e-23
gb|AAG38144.1| unknown [Glycine max]                                   98  1e-19
gb|AAG38145.1| unknown [Glycine max]                                   98  1e-19
pir||T52444 hypothetical protein ZW10 [imported] - Arabidopsis t...    97  3e-19
pir||D96616 hypothetical protein F19C14.10 [imported] - Arabidop...    97  3e-19

>ref|NP_179320.1| expressed protein [Arabidopsis thaliana] gi|25372932|pir||C84550
           hypothetical protein At2g17280 [imported] - Arabidopsis
           thaliana gi|2262159|gb|AAB86505.1| unknown protein
           [Arabidopsis thaliana] gi|26450629|dbj|BAC42426.1|
           unknown protein [Arabidopsis thaliana]
           gi|30017299|gb|AAP12883.1| At2g17280 [Arabidopsis
           thaliana]
          Length = 271

 Score =  108 bits (270), Expect = 7e-23
 Identities = 60/124 (48%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
 Frame = +1

Query: 274 INMIPVKYTKTIHFVRHGQGFHNVAGQINHDNYKSWEHFDAHLTELGWRQAENLGKHVAA 453
           I + P+   KTIH VRH QG HNVAG+ +H  Y S ++FDAHLT LGW+Q +NL  HV A
Sbjct: 6   IGLYPLHRCKTIHLVRHAQGIHNVAGEKDHSAYSSEDYFDAHLTPLGWQQVDNLRNHVRA 65

Query: 454 TRL--PVELVVVAPLQRAMETAVAAFGKHEDPAVAAAAASGAAN-GNGNGVSSSSGDDVP 624
            +L   VELV+V+P+ R ++TAV AFG  ED   A A     AN G+ +  + SS +  P
Sbjct: 66  AQLLNKVELVIVSPMLRTIQTAVGAFGGEEDTNGADATPLMVANAGSSDRPAISSLNSPP 125

Query: 625 LLMV 636
            L V
Sbjct: 126 FLAV 129

>gb|AAG38144.1| unknown [Glycine max]
          Length = 284

 Score = 97.8 bits (242), Expect = 1e-19
 Identities = 46/86 (53%), Positives = 63/86 (72%), Gaps = 2/86 (2%)
 Frame = +1

Query: 277 NMIPVKYTKTIHFVRHGQGFHNVAGQINHDNYKSWEHFDAHLTELGWRQAENLGKHVAAT 456
           ++ P+   KT+H VRH QGFHNV G+ N + YKS++ FDA+LT LGW+Q +NL +HV A+
Sbjct: 8   SLYPLHRCKTLHLVRHAQGFHNVEGEKNFEAYKSYDLFDANLTPLGWKQVDNLRQHVKAS 67

Query: 457 RLP--VELVVVAPLQRAMETAVAAFG 528
            L   +ELV+V+PL R M+TAV  FG
Sbjct: 68  GLSKRIELVIVSPLLRTMQTAVGVFG 93

>gb|AAG38145.1| unknown [Glycine max]
          Length = 284

 Score = 97.8 bits (242), Expect = 1e-19
 Identities = 46/86 (53%), Positives = 63/86 (72%), Gaps = 2/86 (2%)
 Frame = +1

Query: 277 NMIPVKYTKTIHFVRHGQGFHNVAGQINHDNYKSWEHFDAHLTELGWRQAENLGKHVAAT 456
           ++ P+   KT+H VRH QGFHNV G+ N + YKS++ FDA+LT LGW+Q +NL +HV A+
Sbjct: 8   SLYPLHRCKTLHLVRHAQGFHNVEGEKNFEAYKSYDLFDANLTPLGWKQVDNLRQHVKAS 67

Query: 457 RLP--VELVVVAPLQRAMETAVAAFG 528
            L   +ELV+V+PL R M+TAV  FG
Sbjct: 68  GLSKRIELVIVSPLLRTMQTAVGVFG 93

>pir||T52444 hypothetical protein ZW10 [imported] - Arabidopsis thaliana
           (fragment) gi|6520148|dbj|BAA87937.1| ZW10 [Arabidopsis
           thaliana]
          Length = 299

 Score = 96.7 bits (239), Expect = 3e-19
 Identities = 48/89 (53%), Positives = 60/89 (66%), Gaps = 2/89 (2%)
 Frame = +1

Query: 268 PRINMIPVKYTKTIHFVRHGQGFHNVAGQINHDNYKSWEHFDAHLTELGWRQAENLGKHV 447
           P   + P+   KTIH VRH QG HNV G+ NH  Y S + FDAHLT LGW+Q +NL KHV
Sbjct: 28  PSQGLYPLHRCKTIHLVRHAQGIHNVEGEKNHKAYLSEDLFDAHLTPLGWQQVDNLHKHV 87

Query: 448 AATRLP--VELVVVAPLQRAMETAVAAFG 528
            A+ +   +ELVVV+PL R ++TAV  FG
Sbjct: 88  NASGISNRIELVVVSPLLRTLQTAVGTFG 116

>pir||D96616 hypothetical protein F19C14.10 [imported] - Arabidopsis thaliana
           gi|8979945|gb|AAF82259.1|AC008051_10 Identical to gene
           ZW10 from Arabidopsis thaliana gb|AB028195 and is a
           member of the Phosphoglycerate mutase PF|00300 family
          Length = 313

 Score = 96.7 bits (239), Expect = 3e-19
 Identities = 48/89 (53%), Positives = 60/89 (66%), Gaps = 2/89 (2%)
 Frame = +1

Query: 268 PRINMIPVKYTKTIHFVRHGQGFHNVAGQINHDNYKSWEHFDAHLTELGWRQAENLGKHV 447
           P   + P+   KTIH VRH QG HNV G+ NH  Y S + FDAHLT LGW+Q +NL KHV
Sbjct: 42  PSQGLYPLHRCKTIHLVRHAQGIHNVEGEKNHKAYLSEDLFDAHLTPLGWQQVDNLHKHV 101

Query: 448 AATRLP--VELVVVAPLQRAMETAVAAFG 528
            A+ +   +ELVVV+PL R ++TAV  FG
Sbjct: 102 NASGISNRIELVVVSPLLRTLQTAVGTFG 130



EST assemble image


clone accession position
1 LC072h02_r AV624093 1 537
2 MX247e01_r BP091966 1 477
3 LC012e11_r AV619746 4 562
4 LC005f11_r AV619250 4 515
5 LC011e06_r AV619665 298 644




Chlamydomonas reinhardtii
Kazusa DNA Research Institute