KCC002772A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002772A_C01 KCC002772A_c01
cttatgctcgctcattatcatgctcgtgtctatcacgttcttttGCTAGTAACAACTCCC
GCACGATGGCTCCCAGAGTGGGTCAGCAAGAAGGCTAAGGACCAAGGAAGCTTGCTGAGC
ACGCGCTGAGAGCGATGAAGGCGCTCTTGACAGTAGGGGTGTTTTCCATACTGATGGTCA
CGACGCCGTTCATTCTCTACTTCGCATCCTACGAAGGATACCTAGACAAGCTTTACGCGC
TCACCGTCGGCATTCCGGGACCGGAGAACCGCGCTGTGGCCAGCGCCATCCTAGCGGTCC
TCGGAGTGAACCTCGTCGTGGGGGGCTTCCTTTACGTGGCATTCCAGGAGGTGAACACGG
ACGATACGGCAAAGGTGGAGGCAAAGAAGAACGATTAAAACAGCATGCCACCTTCCGCGA
CGGCCGGAGGCAGCCTGCAGAGACCGCACGCCCACGGTGCAGCCCTTGGAGGAGAGGTGC
CTCAGCAAGCCCTGCAGCAAGCCGGGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002772A_C01 KCC002772A_c01
         (508 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00141853.1| COG3210: Large exoproteins involved in heme u...    42  0.003
ref|ZP_00141855.1| COG3210: Large exoproteins involved in heme u...    42  0.003
ref|ZP_00057722.1| hypothetical protein [Thermobifida fusca]           41  0.010
ref|XP_310612.1| ENSANGP00000019321 [Anopheles gambiae] gi|21294...    40  0.013
dbj|BAB64744.1| P0560B06.7 [Oryza sativa (japonica cultivar-group)]    40  0.013

>ref|ZP_00141853.1| COG3210: Large exoproteins involved in heme utilization or adhesion
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 2307

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 35/103 (33%), Positives = 42/103 (39%), Gaps = 4/103 (3%)
 Frame = +2

Query: 212 RRIPRQALRAHRRHSGTGEPRCGQRHPS---GPRSEPRRGGLPLRGIPG-GEHGRYGKGG 379
           RR  R   RA R       PR  QRHP+    P  +PR G     G PG G+ GR  +GG
Sbjct: 99  RRGDRSRRRARRAAQRARRPRAAQRHPAQRRQPGGQPRAGS---EGEPGAGQPGRQPEGG 155

Query: 380 GKEERLKQHATFRDGRRQPAETARPRCSPWRRGASASPAASRG 508
            +  R          RR P +       PWR+ A     A RG
Sbjct: 156 DRPGR----------RRAPGQ-------PWRQAARRGRTAGRG 181

>ref|ZP_00141855.1| COG3210: Large exoproteins involved in heme utilization or adhesion
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 2260

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 35/103 (33%), Positives = 42/103 (39%), Gaps = 4/103 (3%)
 Frame = +2

Query: 212 RRIPRQALRAHRRHSGTGEPRCGQRHPS---GPRSEPRRGGLPLRGIPG-GEHGRYGKGG 379
           RR  R   RA R       PR  QRHP+    P  +PR G     G PG G+ GR  +GG
Sbjct: 52  RRGDRSRRRARRAAQRARRPRAAQRHPAQRRQPGGQPRAGS---EGEPGAGQPGRQPEGG 108

Query: 380 GKEERLKQHATFRDGRRQPAETARPRCSPWRRGASASPAASRG 508
            +  R          RR P +       PWR+ A     A RG
Sbjct: 109 DRPGR----------RRAPGQ-------PWRQAARRGRTAGRG 134

>ref|ZP_00057722.1| hypothetical protein [Thermobifida fusca]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 34/103 (33%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
 Frame = +2

Query: 221 PRQALRAHRRHSGTGEPRCGQRHPSGP---RSEPRRGG----LPLRGIPGGEHGRYGKGG 379
           PR   R  RR  G G PR    HP  P   R    RG     LP RG  G  HG  G G 
Sbjct: 9   PRSRGRPGRRAGGCGAPRRAGAHPVEPGGFRGTGARGTAGARLPARGHHGVGHGGPGAGA 68

Query: 380 GKEERLKQHATFRDGRRQPAETARPRCSPWRRGASASPAASRG 508
           G     +   +    R  P    R R  P    A   P   RG
Sbjct: 69  GVPRAARPARSSGTARPGPRRHRRNRTRPAAHPAGRGPGTVRG 111

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 17/45 (37%), Positives = 21/45 (45%)
 Frame = -2

Query: 453 GRAVSAGCLRPSRKVACCFNRSSLPPPLPYRPCSPPGMPRKGSPP 319
           GR + A    P+R+   CF R  LP P      +P G P K S P
Sbjct: 124 GRKIGARASGPARRAVACFARCLLPSPATAAEPAPRGGPVKHSTP 168

>ref|XP_310612.1| ENSANGP00000019321 [Anopheles gambiae] gi|21294455|gb|EAA06600.1|
           ENSANGP00000019321 [Anopheles gambiae str. PEST]
          Length = 371

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 31/85 (36%), Positives = 37/85 (43%)
 Frame = +2

Query: 197 LLRILRRIPRQALRAHRRHSGTGEPRCGQRHPSGPRSEPRRGGLPLRGIPGGEHGRYGKG 376
           L R +R  P    R   RH   G  RCGQ  P  PR    RG + L  +PG  H R    
Sbjct: 159 LYRRVRLRPVPGDRGRGRHRKHGGGRCGQGDPDDPRPGRWRGPVRLLHLPGSGHRR---P 215

Query: 377 GGKEERLKQHATFRDGRRQPAETAR 451
             + +RL +HA    GR Q A   R
Sbjct: 216 AVRRDRLLRHA----GREQQAGVQR 236

>dbj|BAB64744.1| P0560B06.7 [Oryza sativa (japonica cultivar-group)]
          Length = 917

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = +2

Query: 152 SRGVFHTDGHDAVHSLLRILRRIPRQALRAHRRHSGTGEPRCG-QRHPSGPR-SEPRRGG 325
           +RG +   G     ++L I++ +     RA R H G G  R G Q  P G R S PR GG
Sbjct: 213 ARGAWEYTGDPERANILTIMQAVGASGERAPRGHDGAGGSRRGEQSTPGGGRASGPRHGG 272

Query: 326 LPLRGIPGGEHGRYGKGGGKEERLKQHATFRDGRRQPAETARP 454
                 PGG      +G  K+E     +  R G    A + RP
Sbjct: 273 ------PGGSRPADARGKRKQEDTPSPSPPRGGGAVRASSRRP 309



EST assemble image


clone accession position
1 LC005e05_r AV619234 1 508
2 LCL084a10_r AV630768 45 407




Chlamydomonas reinhardtii
Kazusa DNA Research Institute