KCC002755A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002755A_C01 KCC002755A_c01
gaccgctgcctgccggcaacgagcagttcaacaacatccgtgcggcctggaacagcaaca
gcaactggccttccgctgagGACGTGCTGATGGCCTCCAACGAGAACAAGTGCAAGCTGT
GGAGCTTTGAGAAGGTGGTGACCGATGAGGACTTGCGGCTGGCGCACAACGTCCAGGTTT
CCGAGCTGGCCGGCCAGAAGGTTGGCGGTGACAAGTACCTGTTCATCAACAAGAGCACGA
AACAGCCCGTGGTTGTCTACCGCCCTCGTGGAGACTTCGCCCAGATCAAGACCGCCCTGC
TTGACAACAGCACCTTCCACAAGGACCACGGCATAATCATCCTGGAGCAGGGCTTCCGGA
TTCCGCCCGAGGCCTACAACACGATCGGCGCCCTGGCTGCGGACACTGAGAAGCACAAGC
TCATTTACTCGTACAACAACTTGGGCGAGTATGCATCAGCCAGCGCTGCTGCCATGCGCC
TGAAGCCCAGCAACACTGTTAGCGGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002755A_C01 KCC002755A_c01
         (507 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

prf||2119294A YFW1 gene                                                49  3e-05
ref|NP_081083.1| RIKEN cDNA 1110033F04 [Mus musculus] gi|1283508...    49  4e-05
ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyc...    48  6e-05
emb|CAA09389.1| ICHIT protein [Anopheles gambiae]                      48  8e-05
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    47  2e-04

>prf||2119294A YFW1 gene
          Length = 605

 Score = 49.3 bits (116), Expect = 3e-05
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
 Frame = +1

Query: 19  TSSSTT---SVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTSRFPSW 189
           TS+STT   S  P T   + LPL T     T+ S S           T    TT+   S 
Sbjct: 155 TSTSTTPSTSTTPSTDITSALPLTTATTTSTKLSTSIPT------STTSSTSTTTSTSSS 208

Query: 190 PARRLAVTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTAP-STRTTA*SSWSRASGFR 366
            +  ++VTS+ S+T +  S  L +    +S  S P   ++AP ST TT+ +S S ++   
Sbjct: 209 TSTTVSVTSSTSTTTSTTSSTLISTSTSSSSSSTPTTTSSAPISTSTTSSTSTSTST--- 265

Query: 367 PRPTTRSAPWLRTLRSTSSFTRTTT 441
             PT+ SAP   +  + +S T TTT
Sbjct: 266 TSPTSSSAPTSSSNTTPTSTTFTTT 290

>ref|NP_081083.1| RIKEN cDNA 1110033F04 [Mus musculus] gi|12835082|dbj|BAB23145.1|
           unnamed protein product [Mus musculus]
          Length = 167

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 49/158 (31%), Positives = 54/158 (34%), Gaps = 9/158 (5%)
 Frame = -1

Query: 447 RPSCCTSK----*ACASQCPQPGRRSCCRPRAESGSPAPG*LCRGPC--GRCCCQAGRS* 286
           RPSCC S       C S C +P   SCCRP+           CR  C    CC       
Sbjct: 35  RPSCCVSSCCRPSCCVSSCCRP---SCCRPQCCQSVCCQPTCCRPSCCISSCC------- 84

Query: 285 SGRSLHEGGRQPRAVSCSC**TGTCHRQPSGRPARKPGRCAPAASPHRSPPSQSSTACTC 106
                     QP   S SC  +  C  +P  RP      C+P  SP   P       C  
Sbjct: 85  ----------QPSCGSSSCCGSSCC--RPCCRPC-----CSPCCSPCCRP-------CCR 120

Query: 105 SRWRPSARPQRKASCCCCSRP---HGCC*TARCRQAAV 1
              RP  RP      CCC RP     CC T   R   V
Sbjct: 121 PCCRPCCRP------CCCLRPVCGQVCCQTTCYRPTCV 152

 Score = 38.9 bits (89), Expect = 0.037
 Identities = 36/135 (26%), Positives = 45/135 (32%), Gaps = 5/135 (3%)
 Frame = -1

Query: 420 ACASQCPQPG-RRSCCRPRAESGSPAPG*LCRGPC--GRCCCQAGRS*SGRSLHEGGRQP 250
           +C S C + G  + CC+P     +      CR  C    CC                 +P
Sbjct: 4   SCGSVCSEKGCGQGCCQPSCCQTTCCRTTCCRPSCCVSSCC-----------------RP 46

Query: 249 RAVSCSC**TGTCHRQPSGRPARKPGRCAPAA--SPHRSPPSQSSTACTCSRWRPSARPQ 76
                SC     C  Q       +P  C P+   S    P   SS+ C  S  RP  RP 
Sbjct: 47  SCCVSSCCRPSCCRPQCCQSVCCQPTCCRPSCCISSCCQPSCGSSSCCGSSCCRPCCRPC 106

Query: 75  RKASCCCCSRPHGCC 31
               C  C RP  CC
Sbjct: 107 CSPCCSPCCRP--CC 119

>ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyces avermitilis
           MA-4680] gi|29605870|dbj|BAC69934.1| putative
           protoporphyrinogen oxidase [Streptomyces avermitilis
           MA-4680]
          Length = 474

 Score = 48.1 bits (113), Expect = 6e-05
 Identities = 38/136 (27%), Positives = 51/136 (36%), Gaps = 6/136 (4%)
 Frame = +1

Query: 7   CLPATSSSTTSVRPGTATATGLPLRT--C*WPPTRTSASCGALRRW*PMRTCGWR----T 168
           CLP+T + +   R    +  G   RT  C W   R S      R         W     T
Sbjct: 334 CLPSTGAPSRHRRSPPRSGAGSRTRTPTC-WCCARRSGGTARRRSSAGTTPASWTSRATT 392

Query: 169 TSRFPSWPARRLAVTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTAPSTRTTA*SSWS 348
            +R P+WP RR    S    T  R++P  +T     S  + P C  +  + R T      
Sbjct: 393 CARRPAWPPRRSPAASPAGPTACRSTPSATTRAWPASATTSPSCPASPSAARRTT----- 447

Query: 349 RASGFRPRPTTRSAPW 396
            AS  RP    R+ PW
Sbjct: 448 -ASASRPASPARTPPW 462

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 30/112 (26%), Positives = 43/112 (37%)
 Frame = -1

Query: 420 ACASQCPQPGRRSCCRPRAESGSPAPG*LCRGPCGRCCCQAGRS*SGRSLHEGGRQPRAV 241
           +C      P R     PR+ +GS       R P   CC +     + R     G  P + 
Sbjct: 333 SCLPSTGAPSRHRRSPPRSGAGSRT-----RTPTCWCCARRSGG-TARRRSSAGTTPASW 386

Query: 240 SCSC**TGTCHRQPSGRPARKPGRCAPAASPHRSPPSQSSTACTCSRWRPSA 85
           +       TC R+P+  P R     +PAASP      +S+ + T   W  SA
Sbjct: 387 TSRA---TTCARRPAWPPRR-----SPAASPAGPTACRSTPSATTRAWPASA 430

>emb|CAA09389.1| ICHIT protein [Anopheles gambiae]
          Length = 373

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 2/156 (1%)
 Frame = +1

Query: 1   DRCLPATSSSTTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTSRF 180
           D C    ++   S  PG  T T L   T    PT T+ +      W    T    TT++F
Sbjct: 78  DVCDFPVNAKCESQSPGDQTTTTLRPTTTTLRPTTTTTT-----DWITTTTTEATTTTKF 132

Query: 181 PSWPARRLAVTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTAPSTRTTA*SSWSRASG 360
           P         T+T +S     S W    +  T+P    P   +AP+T TT    WS    
Sbjct: 133 P---------TTTTTSAPTTPSQWTDPTITTTTPVWTDPTTWSAPTTTTT----WSDQP- 178

Query: 361 FRPRPTTRSAPWLRTLRSTSSF--TRTTTWASMHQP 462
             P  TT +  W     +T++   T TTTW+ +  P
Sbjct: 179 -PPPTTTTTTVWTDPTATTTTHAPTTTTTWSDLPPP 213

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 45/165 (27%), Positives = 68/165 (40%), Gaps = 11/165 (6%)
 Frame = +1

Query: 1   DRCLPATSSSTTSVRPGTATATGL-------PLRTC*WPPTRTSASCGALRRW*PMRTCG 159
           D+       +TT++RP T T T            T  +P T T+++     +W       
Sbjct: 95  DQTTTTLRPTTTTLRPTTTTTTDWITTTTTEATTTTKFPTTTTTSAPTTPSQW-----TD 149

Query: 160 WRTTSRFPSW--PARRLAVTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTAPSTRTTA 333
              T+  P W  P    A T+T + +     P  +T  V T P +     T AP+T TT 
Sbjct: 150 PTITTTTPVWTDPTTWSAPTTTTTWSDQPPPPTTTTTTVWTDPTATTT--THAPTTTTT- 206

Query: 334 *SSWSRASGFRPRPTTRSAPWLRTLRSTSSF--TRTTTWASMHQP 462
              WS      P PTT +  W+    +T++   T TTTW+ +  P
Sbjct: 207 ---WSDLPP--PPPTTTTTVWIDPTATTTTHAPTTTTTWSDLPPP 246

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
            gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
            melanogaster]
          Length = 1225

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 43/138 (31%), Positives = 58/138 (41%)
 Frame = +1

Query: 28   STTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTSRFPSWPARRLA 207
            +TT+ R  T T T  P  T     T+TS          P  T    TT+   S P     
Sbjct: 911  TTTTPRSTTTTCTSGPTTTTPRSTTKTSTCA-------PTTTTPRSTTTTSTSRPT---T 960

Query: 208  VTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTAPSTRTTA*SSWSRASGFRPRPTTRS 387
             T   ++T   + P  +T    T+P +  P  TT  ST TT   S SR +   PR TT++
Sbjct: 961  TTPRSTTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTT---STSRPTTTTPRSTTKT 1017

Query: 388  APWLRTLRSTSSFTRTTT 441
            +    T  +  S T TTT
Sbjct: 1018 STCAPTTTTPRSTTTTTT 1035

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 59/201 (29%), Positives = 77/201 (37%), Gaps = 45/201 (22%)
 Frame = +1

Query: 28   STTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTSRFPSWPA---- 195
            +TT+ R  T T T  P  T     T T  SC       P  T    TT+   S P     
Sbjct: 879  TTTTPRSTTTTCTSCPTTTTPRSTTTTCTSC-------PTTTTPRSTTTTCTSGPTTTTP 931

Query: 196  RRLAVTSTCS--STRARNSPWLSTAL-VETSPRS-------RP----PCLTTAPST---- 321
            R    TSTC+  +T  R++   ST+    T+PRS       RP    P  TT PST    
Sbjct: 932  RSTTKTSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPSTSRPT 991

Query: 322  ----RTTA*SSWSRASGFRPRPTTR-------------------SAPWLRTLRSTSSFTR 432
                R+T  +S SR +   PR TT+                   S P   T RST++ T 
Sbjct: 992  TTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTT 1051

Query: 433  TTTWASMHQPALLPCA*SPAT 495
            +    +  +    PC   P T
Sbjct: 1052 SRPTTTTPRSTTTPCTSRPTT 1072

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 46/162 (28%), Positives = 67/162 (40%), Gaps = 9/162 (5%)
 Frame = +1

Query: 4   RCLPATSS---STTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTS 174
           RC   TS+   +TT+ R  T T T  P  T   P   T+ S  +  R  P  T    T+ 
Sbjct: 273 RCTTTTSTCAPTTTTPRSTTTTTTSRPTTTT--PRCTTTTSTCSPTRTTPRSTTTTSTSR 330

Query: 175 RFPSWPARRLAVTSTCSSTRARNSPWLSTAL-----VETSPRSRPPCLTTAPSTRTTA*S 339
              + P      ++TC+      +P  +T         T+PRS     T+ P+T T   +
Sbjct: 331 PTTTTPRCTTTPSTTCTRRPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSGPTTTTPRST 390

Query: 340 SWSRASGFRPRPTT-RSAPWLRTLRSTSSFTRTTTWASMHQP 462
           + +  SG  P  TT RS     T   T++  R+TT  S   P
Sbjct: 391 TTTSTSG--PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGP 430

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
 Frame = +1

Query: 13   PATSSSTTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTSRFPSWP 192
            P ++++T++ RP T T       +   P T T  S        P  T    TT+   S P
Sbjct: 995  PRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRP 1054

Query: 193  ARRL--AVTSTCSSTRARNSPWLSTALVE-----TSPRSRP-PCLTTAPSTRTTA*SSWS 348
                  + T+ C+S     +P  +T         T+PRS   PC TT PS   T  ++  
Sbjct: 1055 TTTTPRSTTTPCTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCPTTTPSASPTRTTTTR 1114

Query: 349  RASGFRPRPTTRSAPW 396
            R     P+P  +  PW
Sbjct: 1115 RPCPCHPQPPYQIPPW 1130

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
 Frame = +1

Query: 4   RCLPATSSSTTSVRPGTAT--ATGLPLRTC*WPPTRTSA-SCGALRRW*PMRTCGWRTTS 174
           R  P ++++T++ RP T T   T  P  TC   PT T+  S        P  T    TT+
Sbjct: 317 RTTPRSTTTTSTSRPTTTTPRCTTTPSTTCTRRPTTTTPRSTTTTCTSGPTTTTPRSTTT 376

Query: 175 RFPSWPA----RRLAVTSTC--SSTRARNSPWLSTA-LVETSPRSRPPCLTTAPSTRTTA 333
              S P     R    TST   ++T  R++   ST+    T+PRS     T+ P+T T  
Sbjct: 377 TCTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPR 436

Query: 334 *SSWSRASGFRPRPTT-RSAPWLRTLRSTSSFTRTTTWASMHQP 462
            ++ +  SG  P  TT RS     T   T++  R+TT  S   P
Sbjct: 437 STTTTSTSG--PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGP 478

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 44/156 (28%), Positives = 61/156 (38%), Gaps = 13/156 (8%)
 Frame = +1

Query: 13   PATSSSTTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTSRFPSWP 192
            P ++++T++ RP T T       T   P T T  S        P  T    TT+   S P
Sbjct: 947  PRSTTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRP 1006

Query: 193  A----RRLAVTSTCS---------STRARNSPWLSTALVETSPRSRPPCLTTAPSTRTTA 333
                 R    TSTC+         +T   + P  +T    T+  +  P  TT  ST T  
Sbjct: 1007 TTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPC 1066

Query: 334  *SSWSRASGFRPRPTTRSAPWLRTLRSTSSFTRTTT 441
             S  +  +      TT S P   T RST++   TTT
Sbjct: 1067 TSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCPTTT 1102

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 46/167 (27%), Positives = 67/167 (39%), Gaps = 3/167 (1%)
 Frame = +1

Query: 4    RCLPATSSS---TTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTS 174
            R    TS+S   TT+ R  T T+T  P  T     T TS S        P  T    TT+
Sbjct: 724  RSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSG-------PTTTTPRSTTT 776

Query: 175  RFPSWPARRLAVTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTAPSTRTTA*SSWSRA 354
               S P      ++T +ST   + P  +T    T+  +  P  TT  ST TT+ S  +  
Sbjct: 777  TSTSGPTTTTPRSTTTTST---SGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT 833

Query: 355  SGFRPRPTTRSAPWLRTLRSTSSFTRTTTWASMHQPALLPCA*SPAT 495
            +      T+ S P   T RST++ + +    +  +     C   P T
Sbjct: 834  TPRSTTTTSTSGPTTTTPRSTTTTSTSCPTTTTPRSTTTTCTSGPTT 880

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 34/110 (30%), Positives = 50/110 (44%), Gaps = 3/110 (2%)
 Frame = +1

Query: 142 PMRTCGWRTTSRFPSWPA---RRLAVTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTA 312
           P  TC   +++  PS P      +  TS C+      +P  ST   +T+P +     TT 
Sbjct: 165 PPCTCSEESSTAIPSSPCIDTSTVIPTSPCTQETTTPTPTCSTQGTQTTPCTCAQTTTTP 224

Query: 313 PSTRTTA*SSWSRASGFRPRPTTRSAPWLRTLRSTSSFTRTTTWASMHQP 462
            ST TT   S SR +   PR TT +     T R T++  R+TT  +  +P
Sbjct: 225 RSTTTT---STSRPTTTTPRSTTTTT----TSRPTTTTPRSTTTTTTRRP 267

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 46/167 (27%), Positives = 66/167 (38%), Gaps = 3/167 (1%)
 Frame = +1

Query: 4    RCLPATSSS---TTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTS 174
            R    TS+S   TT+ R  T T+T  P  T     T TS S        P  T    TT+
Sbjct: 740  RSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSG-------PTTTTPRSTTT 792

Query: 175  RFPSWPARRLAVTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTAPSTRTTA*SSWSRA 354
               S P      ++T +ST   + P  +T    T+  +  P  TT  ST TT+ S  +  
Sbjct: 793  TSTSGPTTTTPRSTTTTST---SGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTT 849

Query: 355  SGFRPRPTTRSAPWLRTLRSTSSFTRTTTWASMHQPALLPCA*SPAT 495
            +      T+ S P   T RST++   +    +  +     C   P T
Sbjct: 850  TPRSTTTTSTSCPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSCPTT 896

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 52/164 (31%), Positives = 70/164 (41%), Gaps = 11/164 (6%)
 Frame = +1

Query: 4    RCLPATSSS---TTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTS 174
            R    TS+S   TT+ R  T T+T  P  T     T TS S        P  T    TT+
Sbjct: 628  RSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSG-------PTTTTPRSTTT 680

Query: 175  RFPSWPA----RRLAVTSTC--SSTRARNSPWLSTA-LVETSPRSRPPCLTTAPSTRTTA 333
               S P     R    TST   ++T  R++   ST+    T+PRS     T+ P+T T  
Sbjct: 681  TSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPR 740

Query: 334  *SSWSRASGFRPRPTT-RSAPWLRTLRSTSSFTRTTTWASMHQP 462
             ++ +  SG  P  TT RS     T   T++  R+TT  S   P
Sbjct: 741  STTTTSTSG--PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGP 782

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 52/164 (31%), Positives = 70/164 (41%), Gaps = 11/164 (6%)
 Frame = +1

Query: 4   RCLPATSSS---TTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTS 174
           R    TS+S   TT+ R  T T+T  P  T     T TS S        P  T    TT+
Sbjct: 388 RSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSG-------PTTTTPRSTTT 440

Query: 175 RFPSWPA----RRLAVTSTC--SSTRARNSPWLSTA-LVETSPRSRPPCLTTAPSTRTTA 333
              S P     R    TST   ++T  R++   ST+    T+PRS     T+ P+T T  
Sbjct: 441 TSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPR 500

Query: 334 *SSWSRASGFRPRPTT-RSAPWLRTLRSTSSFTRTTTWASMHQP 462
            ++ +  SG  P  TT RS     T   T++  R+TT  S   P
Sbjct: 501 STTTTSTSG--PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGP 542

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 52/164 (31%), Positives = 70/164 (41%), Gaps = 11/164 (6%)
 Frame = +1

Query: 4   RCLPATSSS---TTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTS 174
           R    TS+S   TT+ R  T T+T  P  T     T TS S        P  T    TT+
Sbjct: 532 RSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSG-------PTTTTPRSTTT 584

Query: 175 RFPSWPA----RRLAVTSTC--SSTRARNSPWLSTA-LVETSPRSRPPCLTTAPSTRTTA 333
              S P     R    TST   ++T  R++   ST+    T+PRS     T+ P+T T  
Sbjct: 585 TSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPR 644

Query: 334 *SSWSRASGFRPRPTT-RSAPWLRTLRSTSSFTRTTTWASMHQP 462
            ++ +  SG  P  TT RS     T   T++  R+TT  S   P
Sbjct: 645 STTTTSTSG--PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGP 686

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 46/167 (27%), Positives = 64/167 (37%), Gaps = 3/167 (1%)
 Frame = +1

Query: 4    RCLPATSSS---TTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTS 174
            R    TS+S   TT+ R  T T+T  P  T     T TS S        P  T    TT+
Sbjct: 772  RSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSG-------PTTTTPRSTTT 824

Query: 175  RFPSWPARRLAVTSTCSSTRARNSPWLSTALVETSPRSRPPCLTTAPSTRTTA*SSWSRA 354
               S P      ++T +ST   + P  +T    T+  +  P  TT  ST TT  S  +  
Sbjct: 825  TSTSGPTTTTPRSTTTTST---SGPTTTTPRSTTTTSTSCPTTTTPRSTTTTCTSGPTTT 881

Query: 355  SGFRPRPTTRSAPWLRTLRSTSSFTRTTTWASMHQPALLPCA*SPAT 495
            +      T  S P   T RST++   +    +  +     C   P T
Sbjct: 882  TPRSTTTTCTSCPTTTTPRSTTTTCTSCPTTTTPRSTTTTCTSGPTT 928

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 52/164 (31%), Positives = 70/164 (41%), Gaps = 11/164 (6%)
 Frame = +1

Query: 4   RCLPATSSS---TTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTS 174
           R    TS+S   TT+ R  T T+T  P  T     T TS S        P  T    TT+
Sbjct: 484 RSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSG-------PTTTTPRSTTT 536

Query: 175 RFPSWPA----RRLAVTSTC--SSTRARNSPWLSTA-LVETSPRSRPPCLTTAPSTRTTA 333
              S P     R    TST   ++T  R++   ST+    T+PRS     T+ P+T T  
Sbjct: 537 TSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPR 596

Query: 334 *SSWSRASGFRPRPTT-RSAPWLRTLRSTSSFTRTTTWASMHQP 462
            ++ +  SG  P  TT RS     T   T++  R+TT  S   P
Sbjct: 597 STTTTSTSG--PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGP 638

 Score = 39.7 bits (91), Expect = 0.022
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 1/141 (0%)
 Frame = +1

Query: 22  SSSTTSVRPGTATATGLPLRTC*WPPTRTSASCGALRRW*PMRTCGWRTTSRFPSWPARR 201
           + +TT+ R  T T+T  P  T    P  T+ +  +       R+    TT R  +   R 
Sbjct: 218 AQTTTTPRSTTTTSTSRPTTTT---PRSTTTTTTSRPTTTTPRSTTTTTTRRPTTTTPRC 274

Query: 202 LAVTSTCSSTRARNSPWLSTALVETSPRSRPP-CLTTAPSTRTTA*SSWSRASGFRPRPT 378
              TSTC+ T    +P  +T    + P +  P C TT  +   T  +  S  +    RPT
Sbjct: 275 TTTTSTCAPTTT--TPRSTTTTTTSRPTTTTPRCTTTTSTCSPTRTTPRSTTTTSTSRPT 332

Query: 379 TRSAPWLRTLRSTSSFTRTTT 441
           T + P   T  ST+   R TT
Sbjct: 333 T-TTPRCTTTPSTTCTRRPTT 352



EST assemble image


clone accession position
1 LC088g04_r AV625166 1 518
2 LC003e08_r AV619083 273 694




Chlamydomonas reinhardtii
Kazusa DNA Research Institute