KCC002754A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002754A_C01 KCC002754A_c01
GAAACCCATCACGATTACATATTGACCCGCGTTTCCCGATGGAGAAACAGACCAGCACTG
ACAGCCGGTGTAGCGGCTCAACTCCCGTGACCTTCCACGACCATGCACCTCAGCCCTGTG
CTTACGAAAGGTATCGCTCCTTTTGCCAGTTTGCCCTGCTATATACATCTGCAAGCCCAT
TCCACTTTTTGTCATGAGCCTCTCTCGCCGGCCTCTCCTCTCATGTCCGAGCCAGTACTG
CAGTTCCCCTTGTTCCGCTCTCAAAAACAGCAGTCAAAATCATCATTTAACATACATGCG
CGGGGAGGGGTGATGTGTGCATCAAAAAGGCATCATGCCCTTGGACCGTAAGCGGGGTAT
GGTGCCCGCACAAAATTACGTTCAGGTCTGACGCCTTTGTATTCAGCAGCTGTCCTGTTC
CCTCGACCGCTCCTGCTTCTGCCTACCTCTTTCTGTTGCCGCTGCTGCCACCACTAAGCT
AGGAAAAACGAGCACACACGCACGTTCTGCCCAGAGTGCATCCACTGGCTTGTTGCCGCA
TGTATGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002754A_C01 KCC002754A_c01
         (549 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00051632.1| COG1509: Lysine 2,3-aminomutase [Magnetospiri...    35  0.87
dbj|BAB89082.1| OJ1014_G12.16 [Oryza sativa (japonica cultivar-g...    34  1.1
ref|NP_730169.1| CG32159-PB [Drosophila melanogaster] gi|1794550...    34  1.5
ref|NP_060881.2| hairless protein isoform b [Homo sapiens]             32  5.6
ref|NP_494464.1| 7TM chemoreceptor, subfamily 2 (2D452) [Caenorh...    32  5.6

>ref|ZP_00051632.1| COG1509: Lysine 2,3-aminomutase [Magnetospirillum magnetotacticum]
          Length = 566

 Score = 34.7 bits (78), Expect = 0.87
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
 Frame = -1

Query: 264 LRAEQGELQYWLGHERRGRRE---RLMTKSGMGLQMYIAGQTGKRSDTFRKHRAEVHGRG 94
           LR   G L+   G  RRG       L    G  L+   A   G      R+HR  VH   
Sbjct: 30  LRGADGGLRRPAGPVRRGGGNPAPELPRARGRSLRALRAADPGGGVPPLRRHRPPVHDLA 89

Query: 93  RSRELSRYTGCQCWSVSPSGNAGQYV 16
           R R+  R  G       P+G AG+Y+
Sbjct: 90  RGRDRPRCPGRCGDDARPAGGAGRYL 115

>dbj|BAB89082.1| OJ1014_G12.16 [Oryza sativa (japonica cultivar-group)]
          Length = 382

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -1

Query: 249 GELQYWLGHERRGRRERLMTKSGMGLQMYIA-GQTGKRSDTFRKHRAEVHGRGRSRELSR 73
           G  + W G  RR RRER  +++ +  +  +A G TG+R    R +     GRGR R   +
Sbjct: 185 GRRRRWTGARRRRRRERATSRAQIRRRGRVARGGTGRRRHGERLYSV---GRGRERPEGK 241

Query: 72  YTGCQCWSVSPSGNAGQYVIVMGF 1
            TG    ++S S N    V   GF
Sbjct: 242 ETGA---AISGSINGAGEVCGSGF 262

>ref|NP_730169.1| CG32159-PB [Drosophila melanogaster] gi|17945509|gb|AAL48807.1|
           RE23490p [Drosophila melanogaster]
           gi|23093347|gb|AAF49460.2| CG32159-PB [Drosophila
           melanogaster]
          Length = 852

 Score = 33.9 bits (76), Expect = 1.5
 Identities = 18/48 (37%), Positives = 24/48 (49%)
 Frame = +2

Query: 140 LLPVCPAIYICKPIPLFVMSLSRRPLLSCPSQYCSSPCSALKNSSQNH 283
           LLP C    +C  +  +V     +PL +CPS+Y   PCSA  N    H
Sbjct: 510 LLPECAIQQVCNAV--YVRLNYTQPLCACPSRY-RDPCSASLNEDDQH 554

>ref|NP_060881.2| hairless protein isoform b [Homo sapiens]
          Length = 1134

 Score = 32.0 bits (71), Expect = 5.6
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +1

Query: 454 CCRCCHH*ARKNEHTRTFCPECIHWLVAACMR 549
           CC  CHH    N H R  CP C H L  AC R
Sbjct: 599 CCSRCHH-GLFNTHWR--CPRCSHRLCVACGR 627

>ref|NP_494464.1| 7TM chemoreceptor, subfamily 2 (2D452) [Caenorhabditis elegans]
            gi|14670253|gb|AAF60476.2| Hypothetical protein Y27F2A.5
            [Caenorhabditis elegans]
          Length = 1390

 Score = 32.0 bits (71), Expect = 5.6
 Identities = 27/82 (32%), Positives = 44/82 (52%), Gaps = 9/82 (10%)
 Frame = +2

Query: 77   LNSRDLPRPCTSALCLRKVSL-LLPVCPAIYICKPIPLFVMSLSRRPLLSCPSQYCSSPC 253
            L+S +LP+  +SA  +++V L +LP      IC+ I + ++SLSRR    CPS   +   
Sbjct: 1004 LSSANLPKLPSSA-SIKEVGLPILPSSANFEICRTILVRILSLSRR----CPSLKLAEQS 1058

Query: 254  SAL--------KNSSQNHHLTY 295
            + L        +NS Q +H+ Y
Sbjct: 1059 TGLYLTYLQIDQNSIQINHILY 1080



EST assemble image


clone accession position
1 MX211d01_r BP089648 1 389
2 LC073f11_r AV624155 81 535
3 LC064e11_r AV623489 92 556
4 LC098f01_r AV625837 128 420
5 LC005b05_r AV619206 138 689
6 LC006c11_r AV619299 140 584
7 LC003c07_r AV619064 140 580




Chlamydomonas reinhardtii
Kazusa DNA Research Institute