KCC002732A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002732A_C01 KCC002732A_c01
gttgcgtatctatttaagcgCGCACCATGGACTTAATGCGCCGTGTGCTGTAATGCGACA
GGAGCGGGTGGATGGGTATCGCAGGGTCATGTTTGGTTATGTGCAACGGGTGCTGCCGGT
CACTGCACCCGCGGAGCTGATGGCGGGCGCTAGAGCCGGCAAGCAGCTGGAACAAGAATT
GTGTGTGGCATTTGTGGTGTCGATTGGACCGAGGCTTGTAACTGAGCCAAAACAGTACAA
GGCTGCTGATGCTGTCAGCTGAGGACCCCGAGctgccagcgtgcgtacagaatcatactc
caatgcaaaaaaaaaaaaaaaaaactcgagactagttctctctctctctctc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002732A_C01 KCC002732A_c01
         (352 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA69591.1| DAN26 [Homo sapiens]                                   32  1.7
gb|AAN77183.1| SR-related CTD associated factor 6 [Homo sapiens]       32  1.7
gb|AAB53327.1| ERPROT 213-21 [Homo sapiens]                            32  1.7
ref|NP_006378.2| calcium homeostasis endoplasmic reticulum prote...    32  1.7
pir||T46740 microfilarial sheath protein SHP3 [imported] - Litom...    32  2.3

>emb|CAA69591.1| DAN26 [Homo sapiens]
          Length = 469

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 23/70 (32%), Positives = 29/70 (40%)
 Frame = -3

Query: 275 QLGVLS*QHQQPCTVLAQLQASVQSTPQMPHTILVPAACRL*RPPSAPRVQ*PAAPVAHN 96
           Q+  L  QH++  T LAQ Q   Q   Q      + A  +   PP AP      AP    
Sbjct: 323 QIQTLKTQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVKATPPPPAPPPAPAPAPAIPP 382

Query: 95  QT*PCDTHPP 66
            T P D+ PP
Sbjct: 383 TTQPDDSKPP 392

>gb|AAN77183.1| SR-related CTD associated factor 6 [Homo sapiens]
          Length = 916

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 23/70 (32%), Positives = 29/70 (40%)
 Frame = -3

Query: 275 QLGVLS*QHQQPCTVLAQLQASVQSTPQMPHTILVPAACRL*RPPSAPRVQ*PAAPVAHN 96
           Q+  L  QH++  T LAQ Q   Q   Q      + A  +   PP AP      AP    
Sbjct: 313 QIQTLKTQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVKATPPPPAPPPAPAPAPAIPP 372

Query: 95  QT*PCDTHPP 66
            T P D+ PP
Sbjct: 373 TTQPDDSKPP 382

>gb|AAB53327.1| ERPROT 213-21 [Homo sapiens]
          Length = 884

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 23/70 (32%), Positives = 29/70 (40%)
 Frame = -3

Query: 275 QLGVLS*QHQQPCTVLAQLQASVQSTPQMPHTILVPAACRL*RPPSAPRVQ*PAAPVAHN 96
           Q+  L  QH++  T LAQ Q   Q   Q      + A  +   PP AP      AP    
Sbjct: 281 QIQTLKTQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVKATPPPPAPPPAPAPAPAIPP 340

Query: 95  QT*PCDTHPP 66
            T P D+ PP
Sbjct: 341 TTQPDDSKPP 350

>ref|NP_006378.2| calcium homeostasis endoplasmic reticulum protein; ERPROT213-21;
           protein with polyglutamine repeat; SR-related CTD
           associated factor 6 [Homo sapiens]
           gi|18204653|gb|AAH21294.1| Calcium homeostasis
           endoplasmic reticulum protein [Homo sapiens]
          Length = 884

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 23/70 (32%), Positives = 29/70 (40%)
 Frame = -3

Query: 275 QLGVLS*QHQQPCTVLAQLQASVQSTPQMPHTILVPAACRL*RPPSAPRVQ*PAAPVAHN 96
           Q+  L  QH++  T LAQ Q   Q   Q      + A  +   PP AP      AP    
Sbjct: 281 QIQTLKTQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVKATPPPPAPPPAPAPAPAIPP 340

Query: 95  QT*PCDTHPP 66
            T P D+ PP
Sbjct: 341 TTQPDDSKPP 350

>pir||T46740 microfilarial sheath protein SHP3 [imported] - Litomosoides
           sigmodontis gi|6012073|gb|AAB82017.2| microfilarial
           sheath protein SHP3 [Litomosoides sigmodontis]
          Length = 354

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 225 SVTSLGPIDTTNATHNSCSSCLPALAPAISSAGAVTGSTR 106
           S TS   + TT+ T  S +S +    P+IS+  A TGST+
Sbjct: 264 STTSTTSVSTTSGTTKSTTSMISTTGPSISTTPAGTGSTK 303



EST assemble image


clone accession position
1 HCL100e06_r AV645276 1 236
2 HCL100e04_r AV645274 8 236
3 LC028b03_r AV620884 21 352




Chlamydomonas reinhardtii
Kazusa DNA Research Institute