KCC002731A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002731A_C01 KCC002731A_c01
GCCCGGAGGGAAGAAGCGAGTGCGATTCGGCAACGACAGGAGCCGCAGCGCTGAGCGTGG
TGTAGGTGTGCGTGAGGTGGGGGGGGTTCGGTGGGGCCCCGGCCAGATGATGGAGCATGA
GCGCGCTCACACAAACAGACACACGGTGACCAAGATGGAGTCGCAGGGAACGTTGACATG
ACAAGAGAGATCAGGGAATGGCACGGAGGGCAGAGGACGACACGAGTGAGACGGAGCGTG
TCGGCTGGCGACCAGTGGCAAGGGTGTTGGGGCCTGCTTGCGGGCCTGGAGAACGACGCG
CCGTGAAGGTGTTGAAAGGAACACTTTCGGGAATAATATTCAAGAAGCAAGTGCAGCTGT
CGGGACCCTTCGGGACTCTCTGTAAGCAGTGTACATATCaaaaaaaaaaaaaaaaaactc
gagactagttctctctc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002731A_C01 KCC002731A_c01
         (437 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9TV13|I1BC_HORSE Interleukin-1 beta convertase precursor (IL...    36  0.11
ref|XP_303072.1| hypothetical protein XP_303072 [Homo sapiens]         36  0.11
gb|AAF22237.1|AF155829_1 N-type calcium channel alpha-1B subunit...    34  0.40
ref|XP_352702.1| similar to Hypothetical protein FLJ20397 [Homo ...    33  0.69
ref|XP_302346.1| similar to ebiP9498 [Homo sapiens]                    33  0.69

>sp|Q9TV13|I1BC_HORSE Interleukin-1 beta convertase precursor (IL-1BC) (IL-1 beta
           converting enzyme) (ICE) (Interleukin-1 beta converting
           enzyme) (P45) (Caspase-1) (CASP-1)
           gi|5669607|gb|AAD46400.1|AF090119_1 caspase-1 [Equus
           caballus]
          Length = 405

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 26/61 (42%), Positives = 36/61 (58%)
 Frame = -2

Query: 376 VPKGPDSCTCFLNIIPESVPFNTFTARRSPGPQAGPNTLATGRQPTRSVSLVSSSALRAI 197
           + KGP +C  F+  I E  P    T R S GPQ+G N L T  Q +++V + SS AL+A+
Sbjct: 62  IRKGPQACQIFIGHICEDDPHLAETLRLSSGPQSG-NFLKT--QDSQAV-VHSSPALQAM 117

Query: 196 P 194
           P
Sbjct: 118 P 118

>ref|XP_303072.1| hypothetical protein XP_303072 [Homo sapiens]
          Length = 786

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 19/54 (35%), Positives = 26/54 (47%)
 Frame = -1

Query: 203 CHSLISLVMSTFPATPSWSPCVCLCERAHAPSSGRGPTEPPPPHAHLHHAQRCG 42
           CH  +  V+    +    SP   + E+A +P     PT PPP H HL  AQ+ G
Sbjct: 568 CHPFLQEVLHDSQSRRKSSPSRAMLEKAASPP----PTPPPPLHTHLCQAQKLG 617

>gb|AAF22237.1|AF155829_1 N-type calcium channel alpha-1B subunit [Gallus gallus]
          Length = 444

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 26/73 (35%), Positives = 34/73 (45%)
 Frame = +2

Query: 5   GGKKRVRFGNDRSRSAERGVGVREVGGVRWGPGQMMEHERAHTNRHTVTKMESQGTLT*Q 184
           GG K  +  +DRSR  E G G    G V    G   EH R  T+RH+  +   +G  T  
Sbjct: 184 GGSKEGK--SDRSRGQEGGKGHHRRGSVE--EGVEREHRRHRTHRHSAERQGKEGNGT-- 237

Query: 185 ERSGNGTEGRGRH 223
             +G  +E R RH
Sbjct: 238 -INGARSERRTRH 249

>ref|XP_352702.1| similar to Hypothetical protein FLJ20397 [Homo sapiens]
          Length = 759

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 26/72 (36%), Positives = 31/72 (42%)
 Frame = -1

Query: 287 RPASRPQHPCHWSPADTLRLTRVVLCPPCHSLISLVMSTFPATPSWSPCVCLCERAHAPS 108
           RP S P  P H  PA+ LR    +  PPCHS+      + P T S  P      R     
Sbjct: 552 RPLSSPT-PQH--PAEGLRTEDGLRAPPCHSIQQ--RGSGPRTASELPHATASSRG-TQD 605

Query: 107 SGRGPTEPPPPH 72
            GR P+ P P H
Sbjct: 606 PGRPPSSPTPQH 617

>ref|XP_302346.1| similar to ebiP9498 [Homo sapiens]
          Length = 655

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 22/55 (40%), Positives = 23/55 (41%)
 Frame = -3

Query: 330 PKVFLSTPSRRVVLQARKQAPTPLPLVASRHAPSHSCRPLPSVPFPDLSCHVNVP 166
           P  F S P    VL    Q P+P P  AS H P     P    PFP  S H  VP
Sbjct: 318 PSPFPSAPHHSPVLLTIPQCPSPFPS-ASHHFPVPLTIPQCFSPFPSASHHFPVP 371

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 20/55 (36%), Positives = 22/55 (39%)
 Frame = -3

Query: 330 PKVFLSTPSRRVVLQARKQAPTPLPLVASRHAPSHSCRPLPSVPFPDLSCHVNVP 166
           P  F S P    V     Q P+P P  A  H+P     P    PFP  S H  VP
Sbjct: 418 PSPFPSAPHHSPVPLTIPQCPSPFPS-APHHSPVPLTIPQCPSPFPSASHHFPVP 471

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = -3

Query: 330 PKVFLSTPSRRVVLQARKQAPTPLPLVASRHAPSHSCRPLPSVPFPDLSCHVNV 169
           P  F S P    VL    Q P+P P  A  H+P     P    PFP  S H  V
Sbjct: 198 PSPFPSAPHHSPVLLTIPQCPSPFP-SAPHHSPVPLTIPQCFSPFPSASHHFPV 250



EST assemble image


clone accession position
1 LC038f02_r AV621622 1 437
2 HCL100d03_r AV645262 253 399




Chlamydomonas reinhardtii
Kazusa DNA Research Institute