KCC002724A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002724A_C01 KCC002724A_c01
gattaatcgcccgcgcgcgcacgcaacctttctttggtcgcttagtcgccacacggcact
gcaatTTGTTGGTTGCTTTCTCGTTTCAGAAGTACTTCTTTGCAGTTAGCGCGCTGTCTT
TAGTGTTCGACAGGATGCAGATGCTAGGTCGCCAGATTGGTCAGGCCGTGCCTACTAAGG
GCCGGCGCTTGGTGGCCGTGCCGCCGACGAAGCGCGGCCATGGCGCTCGCTCGCTGGTCG
TCGTCGCCAGCCTGACCCGGAGGCCCGAGGATGAGGCGATGGGTGGCAAGTTGCTGATGA
ACAGCATGGAGGATGAGGCCGCCAGCGCTGGCGCGGTGACCAAGCCCTACCGTGCTGCGC
CCCGCGACGCGCTGCGCATGGGCCTGCCCCAGCAAGGGCCGCATGGCGGAGGACACGCAG
CAGCTGCTCAAGGACTGCGCCCTGTCCGTGTACAAGCCCAACCCGCGCCAGTACGTGGCC
AAGATCCCCCAGATCCCGGGCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002724A_C01 KCC002724A_c01
         (503 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB88880.1| ATP phosphoribosyltransferase [Thlaspi goesingense]     59  4e-08
gb|AAM65917.1| ATP phosphoribosyl transferase [Arabidopsis thali...    56  2e-07
dbj|BAA89269.1| ATP phosphoribosyl transferase [Arabidopsis thal...    56  2e-07
ref|NP_563853.1| AtATP-PRT2 mRNA for ATP phosphoribosyl transfer...    56  2e-07
ref|NP_176105.1| ATP phosphoribosyl transferase [Arabidopsis tha...    55  4e-07

>gb|AAB88880.1| ATP phosphoribosyltransferase [Thlaspi goesingense]
          Length = 403

 Score = 58.5 bits (140), Expect = 4e-08
 Identities = 28/37 (75%), Positives = 30/37 (80%)
 Frame = +1

Query: 388 PSKGRMAEDTQQLLKDCALSVYKPNPRQYVAKIPQIP 498
           PSKGRMA DT  LLKDC L V + NPRQYVA+IPQIP
Sbjct: 75  PSKGRMATDTLDLLKDCQLFVKQVNPRQYVAQIPQIP 111

>gb|AAM65917.1| ATP phosphoribosyl transferase [Arabidopsis thaliana]
          Length = 413

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 26/37 (70%), Positives = 30/37 (80%)
 Frame = +1

Query: 388 PSKGRMAEDTQQLLKDCALSVYKPNPRQYVAKIPQIP 498
           PSKGRMA D+  LLKDC L V + NPRQYVA+IPQ+P
Sbjct: 85  PSKGRMAADSLDLLKDCQLFVKQVNPRQYVAQIPQLP 121

>dbj|BAA89269.1| ATP phosphoribosyl transferase [Arabidopsis thaliana]
          Length = 413

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 26/37 (70%), Positives = 30/37 (80%)
 Frame = +1

Query: 388 PSKGRMAEDTQQLLKDCALSVYKPNPRQYVAKIPQIP 498
           PSKGRMA D+  LLKDC L V + NPRQYVA+IPQ+P
Sbjct: 85  PSKGRMAADSLDLLKDCQLFVKQVNPRQYVAQIPQLP 121

>ref|NP_563853.1| AtATP-PRT2 mRNA for ATP phosphoribosyl transferase [Arabidopsis
           thaliana] gi|25083351|gb|AAN72065.1| ATP phosphoribosyl
           transferase [Arabidopsis thaliana]
           gi|26452034|dbj|BAC43107.1| putative ATP phosphoribosyl
           transferase AtATP-PRT2 [Arabidopsis thaliana]
           gi|30725676|gb|AAP37860.1| At1g09795 [Arabidopsis
           thaliana]
          Length = 413

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 26/37 (70%), Positives = 30/37 (80%)
 Frame = +1

Query: 388 PSKGRMAEDTQQLLKDCALSVYKPNPRQYVAKIPQIP 498
           PSKGRMA D+  LLKDC L V + NPRQYVA+IPQ+P
Sbjct: 85  PSKGRMAADSLDLLKDCQLFVKQVNPRQYVAQIPQLP 121

>ref|NP_176105.1| ATP phosphoribosyl transferase [Arabidopsis thaliana]
           gi|11357183|pir||T51818 ATP phosphoribosyltransferase
           (EC 2.4.2.17), isoform 1 [validated] - Arabidopsis
           thaliana gi|6683617|dbj|BAA89268.1| ATP phosphoribosyl
           transferase [Arabidopsis thaliana]
           gi|6683621|dbj|BAA89270.1| ATP phosphoribosyl
           transferase [Arabidopsis thaliana]
           gi|12321260|gb|AAG50704.1|AC079604_11 ATP phosphoribosyl
           transferase [Arabidopsis thaliana]
           gi|20260238|gb|AAM13017.1| ATP phosphoribosyl
           transferase [Arabidopsis thaliana]
           gi|22136526|gb|AAM91341.1| ATP phosphoribosyl
           transferase [Arabidopsis thaliana]
          Length = 411

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 26/37 (70%), Positives = 29/37 (78%)
 Frame = +1

Query: 388 PSKGRMAEDTQQLLKDCALSVYKPNPRQYVAKIPQIP 498
           PSKGRMA D   LLKDC L V + NPRQYVA+IPQ+P
Sbjct: 83  PSKGRMAADAIDLLKDCQLFVKQVNPRQYVAQIPQLP 119



EST assemble image


clone accession position
1 MXL015b01_r BP093881 1 265
2 HCL098e02_r AV645119 66 503




Chlamydomonas reinhardtii
Kazusa DNA Research Institute