KCC002712A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002712A_C01 KCC002712A_c01
gagtagccccaggcgtgtgaagagatgcgtgggtgaagagcgaaagcaAAGCTGGCAAGG
CTAGATTCATAGGTGCTGTGGACTAAGACAATCAAATGCTTTCGGACAAGCGGTGAACGA
AGCGGTCGCGAGCTACACGAACCGCAAACATGTGGCGGAGCCGCGACACGCCGCTTGGCT
TTTTTTGTGTGTGCGTGTGTGATGGATCACCCAGGGGTCATTTCAAGCCAAACACAAGTG
GCTTCCCCAAGGGTACATCAGAATTGAGGTTGATACGGATGCcacggaggagtgcggacg
acactgtaacggaccgctctgc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002712A_C01 KCC002712A_c01
         (322 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_231467.1| similar to ribosomal protein L34 [Rattus norveg...    33  1.1
ref|XP_317498.1| ENSANGP00000012347 [Anopheles gambiae] gi|21300...    26  7.5
ref|XP_317497.1| ENSANGP00000007139 [Anopheles gambiae] gi|21300...    26  7.7
dbj|BAB83505.1| facilitative glucose transporter GLUT11-b [Homo ...    30  9.1
ref|NP_110434.2| glucose transporter protein 10; glucose transpo...    30  9.1

>ref|XP_231467.1| similar to ribosomal protein L34 [Rattus norvegicus]
          Length = 116

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 18/53 (33%), Positives = 26/53 (48%)
 Frame = -3

Query: 230 WLEMTPG*SITHAHTKKAKRRVAAPPHVCGSCSSRPLRSPLVRKHLIVLVHST 72
           WL  TPG  I + +TKK  +   AP   CG C  R     +VR  +++ +  T
Sbjct: 21  WLSRTPGNRIVYLYTKKVGK---APKSACGVCPGRLRGVRVVRPKVLMRLSKT 70

>ref|XP_317498.1| ENSANGP00000012347 [Anopheles gambiae] gi|21300601|gb|EAA12746.1|
           ENSANGP00000012347 [Anopheles gambiae str. PEST]
          Length = 642

 Score = 25.8 bits (55), Expect(2) = 7.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 191 HTKKAKRRVAAPPHVCGSCSSRPLRSPLVRKHLIVLVHS---TYESSLASFAFALHPRIS 21
           H  K+ R+     +VC  C    L    +RKH +V+ HS    Y  +L    F +   ++
Sbjct: 508 HLDKSARK----KYVCDVCGKELLAKVSLRKHTLVM-HSGERPYACNLCDARFQIKAYLT 562

Query: 20  SH 15
           SH
Sbjct: 563 SH 564

 Score = 23.1 bits (48), Expect(2) = 7.5
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = -2

Query: 291 SSVASVSTSILMYPWGSHLCLA*ND-----PWVIHHTRTHKKSQAAC 166
           S +  V    +MY +   LC+           ++HH RTH +   +C
Sbjct: 441 SQLRGVKAHQIMYSFPRFLCIICGQLCCTLKHLMHHERTHSEPSYSC 487

>ref|XP_317497.1| ENSANGP00000007139 [Anopheles gambiae] gi|21300726|gb|EAA12871.1|
           ENSANGP00000007139 [Anopheles gambiae str. PEST]
          Length = 522

 Score = 25.8 bits (55), Expect(2) = 7.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 191 HTKKAKRRVAAPPHVCGSCSSRPLRSPLVRKHLIVLVHS---TYESSLASFAFALHPRIS 21
           H  K+ R+     +VC  C    L    +RKH +V+ HS    Y  +L    F +   ++
Sbjct: 461 HLDKSARK----KYVCDVCGKELLAKVSLRKHTLVM-HSGERPYACNLCDARFQIKAYLT 515

Query: 20  SH 15
           SH
Sbjct: 516 SH 517

 Score = 23.1 bits (48), Expect(2) = 7.7
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = -2

Query: 291 SSVASVSTSILMYPWGSHLCLA*ND-----PWVIHHTRTHKKSQAAC 166
           S +  V    +MY +   LC+           ++HH RTH +   +C
Sbjct: 394 SQLRGVKAHQIMYSFPRFLCIICGQLCCTLKHLMHHERTHSEPSYSC 440

>dbj|BAB83505.1| facilitative glucose transporter GLUT11-b [Homo sapiens]
          Length = 503

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 180 FFCVCVCDGSPRGHFKPNTSG--FPKGTSELRLIRMPRRSADDT 305
           F  VCVC     G F P T G  F + + EL  +  PRR+   T
Sbjct: 448 FLGVCVCGAIYTGLFLPETKGKTFQEISKELHRLNFPRRAQGPT 491

>ref|NP_110434.2| glucose transporter protein 10; glucose transporter protein 11
           [Homo sapiens] gi|17432407|gb|AAL39061.1|AF443201_1
           sugar transporter GLUT11 long form [Homo sapiens]
          Length = 503

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 180 FFCVCVCDGSPRGHFKPNTSG--FPKGTSELRLIRMPRRSADDT 305
           F  VCVC     G F P T G  F + + EL  +  PRR+   T
Sbjct: 448 FLGVCVCGAIYTGLFLPETKGKTFQEISKELHRLNFPRRAQGPT 491



EST assemble image


clone accession position
1 HCL096a02_r AV644959 1 223
2 LCL062g12_r AV629657 49 362




Chlamydomonas reinhardtii
Kazusa DNA Research Institute