KCC002709A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002709A_C01 KCC002709A_c01
ctggagcgcgcgctgtacagccacgccaacgccgtcaccaacatgtactgcggcggcggt
gtgtattaccgcggcctggtGGAGTTCTCCAACATCTGCCAGAACGACTGCAGCTACTGC
GGCATCCGCAACAACCAGAAGGAGGTGTGGCGCTACACCATGCCGGTGGAGGAGGTGGTG
GAGGTGGCCAAGTGGGCGCTGGAGAACGGCATCCGCAACATCATGCTGCAGGGCGGCGAG
CTCAAAACGGAGCAGCGCCTGGCGTATCTGGAGGCGTGCGTGCGCGCCATCCGCGAGGAG
ACCACCCAGCTGGACCTGGAGATGCGCGCGCGCGCCGCCTCCACCACCACAGCTGAGGCC
GCCGCCTCCGCGCAGGCGGACGCAGAGGCCAAGAGGGGCGAGCCGGAGCTAGGCGTGGTG
GTGTCGCTGAGTGTGGGCGAGCTGCCCATGGAGCAGTACGAGCGGCTGTTCAGGGCTGGC
GCGCGGCGCTACCTGATCCGCATCGAGACCTCCAACCCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002709A_C01 KCC002709A_c01
         (520 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_563376.1| probable biotin synthetase [Clostridium perfrin...    99  4e-20
ref|NP_229074.1| biotin synthetase, putative [Thermotoga maritim...    96  2e-19
ref|NP_623465.1| Biotin synthase and related enzymes [Thermoanae...    94  8e-19
ref|NP_348258.1| Biotin synthase family enzyme [Clostridium acet...    93  2e-18
ref|NP_622716.1| Biotin synthase and related enzymes [Thermoanae...    89  3e-17

>ref|NP_563376.1| probable biotin synthetase [Clostridium perfringens]
           gi|18146126|dbj|BAB82166.1| probable biotin synthetase
           [Clostridium perfringens str. 13]
          Length = 347

 Score = 98.6 bits (244), Expect = 4e-20
 Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
 Frame = +1

Query: 1   LERALYSHANAVTNMYCGGGVYYRGLVEFSNICQNDCSYCGIRNNQKEVWRYTMPVEEVV 180
           +   L+  A+ V   Y G  V+ RGL+EF+NIC+ +C YCG+R + K + RY +  EE++
Sbjct: 28  INEELFKAADEVRKKYLGDEVHLRGLIEFTNICKRNCMYCGLRRDNKNLNRYRLSHEEII 87

Query: 181 EVAKWALENGIRNIMLQGGE--LKTEQRLAYLEACVRAIREETTQLDLEMRARAASTTTA 354
           + AK A+  G + ++LQGGE    T +RL  +   ++A                      
Sbjct: 88  DFAKKAVGYGYKTLVLQGGEDDYYTVERLVPIVKDLKA---------------------- 125

Query: 355 EAAASAQADAEAKRGEPELGVVVSLSVGELPMEQYERLFRAGARRYLIRIETSN 516
                             LGV ++LS+GE P E+YE L +AGA R+L+RIET++
Sbjct: 126 ------------------LGVALTLSIGERPFEEYEALKKAGADRFLLRIETTD 161

>ref|NP_229074.1| biotin synthetase, putative [Thermotoga maritima]
           gi|7462819|pir||D72274 hypothetical protein TM1269 -
           Thermotoga maritima (strain MSB8)
           gi|4981826|gb|AAD36344.1|AE001782_5 biotin synthetase,
           putative [Thermotoga maritima]
          Length = 348

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 58/170 (34%), Positives = 86/170 (50%)
 Frame = +1

Query: 10  ALYSHANAVTNMYCGGGVYYRGLVEFSNICQNDCSYCGIRNNQKEVWRYTMPVEEVVEVA 189
           AL+  A+ +   Y G  V+ R ++EFSN+C+ +C YCG+R + K + RY M  EE+VE A
Sbjct: 34  ALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERA 93

Query: 190 KWALENGIRNIMLQGGELKTEQRLAYLEACVRAIREETTQLDLEMRARAASTTTAEAAAS 369
           + A++ G + I+LQ GE        Y+   +  I +E                       
Sbjct: 94  RLAVQFGAKTIVLQSGE-----DPYYMPDVISDIVKEI---------------------- 126

Query: 370 AQADAEAKRGEPELGVVVSLSVGELPMEQYERLFRAGARRYLIRIETSNP 519
                       ++GV V+LS+GE P E YE+   AGA RYL+R ET+NP
Sbjct: 127 -----------KKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANP 165

>ref|NP_623465.1| Biotin synthase and related enzymes [Thermoanaerobacter
           tengcongensis] gi|20516897|gb|AAM25069.1| Biotin
           synthase and related enzymes [Thermoanaerobacter
           tengcongensis]
          Length = 353

 Score = 94.4 bits (233), Expect = 8e-19
 Identities = 59/168 (35%), Positives = 81/168 (48%)
 Frame = +1

Query: 13  LYSHANAVTNMYCGGGVYYRGLVEFSNICQNDCSYCGIRNNQKEVWRYTMPVEEVVEVAK 192
           LY  A+ V   Y G  V+ RGL+EFSN C N C YCG+R   K + RY M  EE++E AK
Sbjct: 41  LYKAADRVRKKYVGDEVHLRGLIEFSNYCHNTCFYCGLRGPNKAIKRYRMEPEEIIECAK 100

Query: 193 WALENGIRNIMLQGGELKTEQRLAYLEACVRAIREETTQLDLEMRARAASTTTAEAAASA 372
             +E  ++ I+LQ GE     ++  L   V  I+                          
Sbjct: 101 RGVEMELKTIVLQSGE-DRYYKITTLCNIVEKIK-------------------------- 133

Query: 373 QADAEAKRGEPELGVVVSLSVGELPMEQYERLFRAGARRYLIRIETSN 516
                      E+ V V+L +GEL  ++Y  L +AGA RYL+RIET+N
Sbjct: 134 -----------EMDVAVTLIIGELSKKEYAELKKAGADRYLLRIETTN 170

>ref|NP_348258.1| Biotin synthase family enzyme [Clostridium acetobutylicum]
           gi|25303823|pir||C97101 biotin synthase family enzyme
           [imported] - Clostridium acetobutylicum
           gi|15024589|gb|AAK79598.1|AE007672_5 Biotin synthase
           family enzyme [Clostridium acetobutylicum]
          Length = 350

 Score = 92.8 bits (229), Expect = 2e-18
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
 Frame = +1

Query: 13  LYSHANAVTNMYCGGGVYYRGLVEFSNICQNDCSYCGIRNNQKEVWRYTMPVEEVVEVAK 192
           +Y  A+ V   Y G  V+ RGL+EFSNIC+ +C YCG+R + K + RY +  +E++ +AK
Sbjct: 35  IYKAADRVREKYVGEEVHLRGLIEFSNICKRNCMYCGLRRDNKNIKRYRLEPDEIIHLAK 94

Query: 193 WALENGIRNIMLQGGE--LKTEQRLAYLEACVRAIREETTQLDLEMRARAASTTTAEAAA 366
            A   G + ++LQ GE    T +++ Y+ + ++                           
Sbjct: 95  SAKNYGYQTVVLQSGEDDYYTVEKMKYIVSEIK--------------------------- 127

Query: 367 SAQADAEAKRGEPELGVVVSLSVGELPMEQYERLFRAGARRYLIRIETSN 516
                        +L + ++LS+GE   E+YE   ++GA RYLIRIET++
Sbjct: 128 -------------KLNMAITLSIGEKTFEEYEEYRKSGADRYLIRIETTD 164

>ref|NP_622716.1| Biotin synthase and related enzymes [Thermoanaerobacter
           tengcongensis] gi|20516079|gb|AAM24320.1| Biotin
           synthase and related enzymes [Thermoanaerobacter
           tengcongensis]
          Length = 351

 Score = 89.0 bits (219), Expect = 3e-17
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 2/170 (1%)
 Frame = +1

Query: 13  LYSHANAVTNMYCGGGVYYRGLVEFSNICQNDCSYCGIRNNQKEVWRYTMPVEEVVEVAK 192
           L+  A+ V   + G  V+ RGL+EFS+ C+NDC YCG+R + +   RY M  +E+VEVAK
Sbjct: 35  LFKTADRVRKEHVGDEVFLRGLIEFSSYCKNDCFYCGLRRSNQNAQRYRMQEDEIVEVAK 94

Query: 193 WALENGIRNIMLQGGE--LKTEQRLAYLEACVRAIREETTQLDLEMRARAASTTTAEAAA 366
            A + G R ++LQ GE    T+ RL  +                                
Sbjct: 95  RAYQMGYRTVVLQSGEDMYYTKDRLCSI-------------------------------- 122

Query: 367 SAQADAEAKRGEPELGVVVSLSVGELPMEQYERLFRAGARRYLIRIETSN 516
                   K+ +  + V ++LS+GE   ++Y+    AGA R+L+R ETSN
Sbjct: 123 -------IKKMKRVVDVAITLSIGERSYDEYKVFKDAGADRFLMRFETSN 165



EST assemble image


clone accession position
1 LCL073g08_r AV630134 1 233
2 HCL095f05_r AV644928 114 520




Chlamydomonas reinhardtii
Kazusa DNA Research Institute