KCC002689A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002689A_C01 KCC002689A_c01
CGCAACTGGACGTCTGGCGCACTACGACCCCGCCGCCGAGCCGTGGCGGCTGCATGTGTT
CAGCTGCGACTACAAGCACACGGGCGTGACGGGCTGGCCTGTGTACCGGGTGGTGGTCAC
CTCGCGCTGGTGTGGCTGGGTGCGCTGGGTGGACCTGGCGGAGTGAGGGCGAGCTGGTGC
AGCCTACGGAGCAGTGCCCCGCCCGCCAGCCCCGCCGACATCGGCTACAGCCACGTGTTC
GCGCAGCTGTACCAGGCCTACGAGCCGCGCTACAGCCCAGAGGCCCTGGCGGCGCTGTAC
GGCAGCAGCAGCAGCAAGGGGAAGGCGGCTGCTGGCGGCTGCGGCGCAGCACGACACGCC
CGCCCTGCGGCACCTGGACGTGTCGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002689A_C01 KCC002689A_c01
         (386 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC39040.1| putative protein [Oryza sativa]                        42  0.002
gb|AAP42855.1| NanA1 [Streptomyces nanchangensis]                      40  0.006
dbj|BAC37396.1| unnamed protein product [Mus musculus]                 40  0.006
ref|ZP_00091011.1| COG2897: Rhodanese-related sulfurtransferase ...    40  0.008
pir||A48292 mucin, tracheobronchial - dog gi|402558|emb|CAA48914...    39  0.014

>emb|CAC39040.1| putative protein [Oryza sativa]
          Length = 478

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = -2

Query: 331 QPPSPCCCCCRTAPPGPLGCSAARRPGTAARTRGCSRCRRGWRAGHCSVGCTSSPSLRQV 152
           QPP P        PP  +GC++  +P + +     + C         ++GCTS+PS   +
Sbjct: 44  QPPPPDAPLAPIRPPF-IGCASRAKPASIS-----AACASRAEPAFAAIGCTSTPSRSPI 97

Query: 151 HPAHPATPARGDHHPVHRPA---RHA 83
            P + ATPAR +  P  R A   RHA
Sbjct: 98  PPPNDATPARCNRLPRPRLAVRSRHA 123

>gb|AAP42855.1| NanA1 [Streptomyces nanchangensis]
          Length = 2902

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 41/133 (30%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
 Frame = +1

Query: 16   GALRPRRRAVAAAC-----VQLRLQAHGRD------GLACVPGGGHLALVWLGALGGPGG 162
            G   P R A  A C     V+ R   HG D        A   GG      W G LG   G
Sbjct: 2623 GPAAPERAAAGAFCAAVTDVRRRAGLHGLDVAFGPWAAADDDGGADSGGRWTGVLGADRG 2682

Query: 163  VRASWCSLRSSAPPASPADIGYSHVFAQLYQAYEPRYSPEALAALYGSSSSKGKAAAGGC 342
            +     + R+  P    ADI       +   A+     P AL  L  S+S    A+AGG 
Sbjct: 2683 LALLRAACRADRPRLVAADIR-----TRALTAHPAHELPAALRTLGASAS----ASAGGR 2733

Query: 343  GAARHARPAAPGR 381
               R    AAPGR
Sbjct: 2734 APVRRVAAAAPGR 2746

>dbj|BAC37396.1| unnamed protein product [Mus musculus]
          Length = 221

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 39/113 (34%), Positives = 46/113 (40%)
 Frame = -2

Query: 346 RRSRQQPPSPCCCCCRTAPPGPLGCSAARRPGTAARTRGCSRCRRGWRAGHCSVGCTSSP 167
           RR R+ P S C      APP     +AA R G  A   G +R R G RA  C  GC S+P
Sbjct: 15  RRWRRDPRSSCGPAAGPAPPP--APTAAGRSGPEAGAPGATR-RGGRRASGCW-GCRSAP 70

Query: 166 SLRQVHPAHPATPARGDHHPVHRPARHARVLVVAAEHMQPPRLGGGVVVRQTS 8
           S+    PA  A P     HP   PA   R    +      P  G     + TS
Sbjct: 71  SV----PAAAAKPGVAPAHPRASPAAAERPSPGSGRAQPIPPRGSAASPKPTS 119

>ref|ZP_00091011.1| COG2897: Rhodanese-related sulfurtransferase [Azotobacter
           vinelandii]
          Length = 523

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 38/120 (31%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
 Frame = -2

Query: 346 RRSRQQPPSPCCCCCRTAPPGPLGCSAARRPGTAART-RGCSRCRRGWRAGHCSVGCTSS 170
           +R R + P+      R  P G LG    R  GTA    R C R RR  R G    G  S+
Sbjct: 62  KRRRPRRPARHLPASRLPPAGGLGPPGRRHAGTAGGAGRSCQRLRRPVRGGQVVAGQQSA 121

Query: 169 PSLRQVHPAHPATPARGDHHPVHRPA----RHARVLVVAAEHMQPPRLGGGVVVRQTSSC 2
              R        T  +G  H  HRPA    R  R   +A      PR       RQT  C
Sbjct: 122 ARGRHPRRRPLGTDRQGHAHHHHRPAVPFSRRRRTDRLARHPRVQPR------PRQTRGC 175

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
 Frame = +3

Query: 204 RQPRRHRLQPRVRA------AVPGLRAALQPRGPGGAVRQQQQQGEGGCWRLRRSTTR-- 359
           R+P RHRL+P  RA       +PG R A   R P  A  +Q + GE G  R  R   R  
Sbjct: 16  RRPDRHRLRPAARAPCQPHRPLPGRRRA--RRHPPAAAAEQGRPGERGKRRRPRRPARHL 73

Query: 360 -----PPCG 371
                PP G
Sbjct: 74  PASRLPPAG 82

>pir||A48292 mucin, tracheobronchial - dog gi|402558|emb|CAA48914.1| mucin [Canis
            familiaris]
          Length = 1118

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = -2

Query: 304  CRTAPPGPLG--CSAARRPGTAART-----RGCSRCRRGWRAGHCSVGCTSSPSLRQVHP 146
            CR  PP P G  C+ +R     A T      GCS C       H  + CT++P+   +  
Sbjct: 921  CRVTPPFPSGKPCADSRLMNPTAETGSVIGAGCSCCVLTTPTTHRVIRCTTAPTPTPIST 980

Query: 145  AHPATPARGDHHPVHRP 95
                TP +  H P HRP
Sbjct: 981  TTTVTPTQ--HPPAHRP 995



EST assemble image


clone accession position
1 HCL088f10_r AV644444 1 301
2 MXL072g07_r BP097268 1 386




Chlamydomonas reinhardtii
Kazusa DNA Research Institute