KCC002638A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002638A_C01 KCC002638A_c01
gctacaacatgagacggagcgtgattagagcatggaagggcgacaggggccacgggtaag
gcgacccctggcttgctccgCTTTCCTCCAAACAATGGCGCATTTGCCAGCCAGTGGTGC
ACCCAGCGTGCATATAACTTGCGCAACTCGAAGATTATTGTTACTGCCGAAGATTATGTG
CGGCTGCCGGGCCTTGCACCAAGAGTGTGGGCCTGTTGTCAGTGCCGATCCGGGTTAATT
TACTTCACCTTTATCCTTGTGATTCACTCACTGTTTGGTGAAGCACCTCCCGCGCTTTTT
CGTGGCGCGGTCGTGCTCTACTCCCCCGGTCCTGTGGTGGGTGCGGGGAGTTATTTGCGC
TCCGTCTAGCGCTAACCCAGGTTGCAGGGTGCAGTGTCCTAACCATGTGACGTGCGTGGG
TTCGGTCTCGTGTGTACCATGCTATACACAATCTGTCGATGCCCACCGTCACGTATTCCC
CGAAAACCATATGCACCGGCGGGTTTTGCACATGTGCGCGCTCGCGCGCAAGCATACAGC
ATCAAGGTCACGCCTAACCCGGGTTACCCGCCCGGCACCTGGGCAAGCAAATCACGTCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002638A_C01 KCC002638A_c01
         (599 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA71379.1| Notch receptor protein [Danio rerio]                   34  1.8
ref|NP_571624.2| notch homolog 5 [Danio rerio] gi|8132060|gb|AAF...    34  1.8
ref|NP_523682.1| Gustatory receptor 47a CG12906-PA [Drosophila m...    33  4.0
ref|ZP_00091456.1| COG0604: NADPH:quinone reductase and related ...    32  5.2
ref|XP_330941.1| hypothetical protein [Neurospora crassa] gi|289...    32  5.2

>emb|CAA71379.1| Notch receptor protein [Danio rerio]
          Length = 762

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 136 YMHAGCTTGWQMRHCLEESGASQGSPYPWPLS 41
           + H  CT GW+ + C +++G+S   P P P++
Sbjct: 210 FFHCQCTNGWKGKRCEQKTGSSAPLPSPCPIA 241

>ref|NP_571624.2| notch homolog 5 [Danio rerio] gi|8132060|gb|AAF73197.1|AF152001_1
            Notch3 [Danio rerio]
          Length = 2468

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 136  YMHAGCTTGWQMRHCLEESGASQGSPYPWPLS 41
            + H  CT GW+ + C +++G+S   P P P++
Sbjct: 1364 FFHCQCTNGWKGKRCEQKTGSSAPLPSPCPIA 1395

>ref|NP_523682.1| Gustatory receptor 47a CG12906-PA [Drosophila melanogaster]
           gi|7303756|gb|AAF58804.1| CG12906-PA [Drosophila
           melanogaster]
          Length = 361

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 207 HSWCKARQPHIIFGSNNNLRVAQVICTLGAPLAGKCAIVWRKAEQARGRLTRG 49
           H+ C     H+ + + +NLRV+  + T+G  +A      W KA+  R  L RG
Sbjct: 47  HALCVLALAHMSYSTASNLRVSVTVLTIGGTMACCVKSCWEKAQGIR-NLARG 98

>ref|ZP_00091456.1| COG0604: NADPH:quinone reductase and related Zn-dependent
           oxidoreductases [Azotobacter vinelandii]
          Length = 331

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 252 YPCDSLTVW*STSRAFSWRGRALLPRSCGGCGELFALRLALTQVAGCSVLTM*RAWVRSR 431
           +PC +LT W +  +  +  GR +L    GG    + ++LA  +    + ++  R W R R
Sbjct: 131 FPCPALTAWLAIEKLPAQPGRPILIGGAGGAVGHYLVQLASARGFAVTTMSHPRHWERLR 190

Query: 432 VYHAIHNLSMPTVT 473
              A   ++ P  T
Sbjct: 191 TLGAQDCIAGPLAT 204

>ref|XP_330941.1| hypothetical protein [Neurospora crassa] gi|28923628|gb|EAA32799.1|
           hypothetical protein [Neurospora crassa]
          Length = 295

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +1

Query: 46  GATGKATPGLLRFPPN-----NGAFASQWCTQRAYNLRNSKIIVTAEDYV 180
           G T K+T  LLR+ P      N  + ++WC     NL+  ++I   ED +
Sbjct: 21  GITAKSTAQLLRYLPRSTKDTNSNYMAKWCFNLGINLKRIEVIADDEDEI 70



EST assemble image


clone accession position
1 HCL073h09_r AV643671 1 457
2 HCL093d07_r AV644761 106 599




Chlamydomonas reinhardtii
Kazusa DNA Research Institute