KCC002618A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002618A_C01 KCC002618A_c01
tgttggtcaagCTCTTACATAACACACCCACGCGCACGTCGTGTCCACTTGACACACCTG
AGGTCTAAGCATAAGGAAGATGCTGGCACAGTGAAGCCAGCCAACAACCAGCCATGCTCC
GAGCTCGGCGCTTGCTCGCGCAAGGCGCTGTGGCCACCTGGGGACAATGCGCCGCTGCAG
CTGAAGCTACTCGGGATTTAGCAGCGATTCGCTTCGATGGAGCGGCCGGACTGAGTGCAC
GCGCAATTACGGGCAGCTCTTTGGCTGAGGAGGACGACAAAGCTGGCCGGCCGACTACGC
CATGGGTTCGACAAGTCATCAGCGGGGTGGATCTGATGCGCCATCCCAAGTACAACAAGG
GGCTCGCCTTCTCTGACGCGGAGCGCGACCGGCTGTATCTGCGCGGCCTGCTGCCGCCGG
CGGTGCTGAGCCAGGAGGTGCAGCTGGAGCGCACGCTGCTCAACATCCGCAGCAAGGACT
CGGACCTGGAGAAGAGCACCTACATGCAGAGTCTGCAGGAGCGCAACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002618A_C01 KCC002618A_c01
         (528 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB03427.1| unnamed protein product [Oryza sativa (japonica ...    98  7e-20
dbj|BAB91939.1| putative NADP dependent malic enzyme [Oryza sati...    91  7e-18
pir||T02763 probable malate dehydrogenase (oxaloacetate-decarbox...    91  1e-17
gb|AAB08874.1| malate dehydrogenase [Vitis vinifera]                   91  1e-17
sp|P43279|MAOC_ORYSA NADP-DEPENDENT MALIC ENZYME, CHLOROPLAST PR...    89  3e-17

>dbj|BAB03427.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
           gi|9711835|dbj|BAB07934.1| Oryza sativa NADP-dependent
           malic enzyme, chloroplast precursor [Oryza sativa
           (japonica cultivar-group)]
          Length = 639

 Score = 97.8 bits (242), Expect = 7e-20
 Identities = 58/143 (40%), Positives = 77/143 (53%), Gaps = 15/143 (10%)
 Frame = +3

Query: 144 GAVATWGQCAAAAEATRDLAAIRFDGAAGLSARAITGSSLAEEDDK-----AGR------ 290
           G+  +   C +  E  R  AA+R   AA     A+   S AE + K     AG       
Sbjct: 25  GSSGSGSGCTSCREVRRRAAAVRVRAAAPRRVEAVAMESAAETEKKEEVAAAGGGVEDMA 84

Query: 291 ----PTTPWVRQVISGVDLMRHPKYNKGLAFSDAERDRLYLRGLLPPAVLSQEVQLERTL 458
               P TPW   V SG  L+R P +NKGLAFS+ ERD  YLRGLLPPAV+SQ++Q+++ +
Sbjct: 85  TEEVPVTPWAFSVASGYTLLRDPHHNKGLAFSEKERDAHYLRGLLPPAVVSQDLQVKKIM 144

Query: 459 LNIRSKDSDLEKSTYMQSLQERN 527
            N+R     L++   M  LQERN
Sbjct: 145 HNLRQYSVPLQRYMAMMDLQERN 167

>dbj|BAB91939.1| putative NADP dependent malic enzyme [Oryza sativa (japonica
           cultivar-group)]
          Length = 537

 Score = 91.3 bits (225), Expect = 7e-18
 Identities = 50/106 (47%), Positives = 68/106 (63%), Gaps = 2/106 (1%)
 Frame = +3

Query: 216 DGAAGLSARAITGSSLAEEDDKA--GRPTTPWVRQVISGVDLMRHPKYNKGLAFSDAERD 389
           +GAA ++  A  G   A  +D+A   +P TPW   V SG  L+R P++NKGL+F++ ERD
Sbjct: 8   NGAATMAGVATGGVEDAYGEDRATEDQPITPWAVCVASGHSLLRDPRHNKGLSFTEKERD 67

Query: 390 RLYLRGLLPPAVLSQEVQLERTLLNIRSKDSDLEKSTYMQSLQERN 527
             YLRGLLPP VLSQE+Q +R L N+R     L++   +  LQERN
Sbjct: 68  AHYLRGLLPPVVLSQELQEKRLLQNVRQFQVPLQRYMALMDLQERN 113

>pir||T02763 probable malate dehydrogenase (oxaloacetate-decarboxylating) (NADP)
           (EC 1.1.1.40) - maize gi|2950395|emb|CAA12157.1|
           oxidoreductase [Zea mays]
          Length = 652

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 47/112 (41%), Positives = 68/112 (59%), Gaps = 3/112 (2%)
 Frame = +3

Query: 201 AAIRFDGAAGLSARAITGS---SLAEEDDKAGRPTTPWVRQVISGVDLMRHPKYNKGLAF 371
           AA R+ G   ++   +TG    +  E+     +  TPW   + SG  L+R P++NKGL+F
Sbjct: 69  AACRWGGQVAMAPGVVTGGVEDAYGEDRATEDQTVTPWAVCIASGHSLLRDPRHNKGLSF 128

Query: 372 SDAERDRLYLRGLLPPAVLSQEVQLERTLLNIRSKDSDLEKSTYMQSLQERN 527
           ++ ERD  YLRGLLPP VLSQ++Q +R L N+R     L++ T +  LQERN
Sbjct: 129 TEKERDTHYLRGLLPPVVLSQDLQEKRMLQNVRQFQVPLQRYTALMDLQERN 180

>gb|AAB08874.1| malate dehydrogenase [Vitis vinifera]
          Length = 640

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 47/96 (48%), Positives = 62/96 (63%)
 Frame = +3

Query: 240 RAITGSSLAEEDDKAGRPTTPWVRQVISGVDLMRHPKYNKGLAFSDAERDRLYLRGLLPP 419
           R + G   A ED    +  TPW   V SG  L+R+P +NKGLAF++ ERD  YLRGLLPP
Sbjct: 77  RDVQGEDAATED----QIVTPWTITVASGYSLLRNPHHNKGLAFTEKERDHHYLRGLLPP 132

Query: 420 AVLSQEVQLERTLLNIRSKDSDLEKSTYMQSLQERN 527
           AV+SQ++Q+++ + NIR     L+K   M  LQERN
Sbjct: 133 AVVSQDLQVKKLMANIRQYTVPLQKYMAMMDLQERN 168

>sp|P43279|MAOC_ORYSA NADP-DEPENDENT MALIC ENZYME, CHLOROPLAST PRECURSOR (NADP-ME)
           gi|1076749|pir||S46499 NADP-dependent malic enzyme -
           rice gi|415315|dbj|BAA03949.1| NADP-dependent malic
           enzyme [Oryza sativa]
          Length = 638

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
 Frame = +3

Query: 192 RDLAAIRFDGAAGLSARAITGSSLAEEDDKAGR--PTTPWVRQVISGVDLMRHPKYNKGL 365
           R + A+  + AA    +    ++    +D A    P TPW   V SG  L+R P +NKGL
Sbjct: 53  RRVEAVAMESAAETEKKEEVAAAGGGVEDMATEEVPVTPWAFSVASGYTLLRDPHHNKGL 112

Query: 366 AFSDAERDRLYLRGLLPPAVLSQEVQLERTLLNIRSKDSDLEKSTYMQSLQERN 527
           AFS+ ERD  YLRGLLPPAV+SQ++Q+++ + N+R     L++   M  LQERN
Sbjct: 113 AFSEKERDAHYLRGLLPPAVVSQDLQVKKIMHNLRQYSVPLQRYMAMMDLQERN 166



EST assemble image


clone accession position
1 LCL043c07_r AV628525 1 528
2 HCL070c08_r AV643475 12 473




Chlamydomonas reinhardtii
Kazusa DNA Research Institute