Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002616A_C01 KCC002616A_c01
(530 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM92813.1| hypothetical protein [Oryza sativa (japonica cult... 39 0.055
ref|NP_871702.1| COLlagen structural gene (col-95) [Caenorhabdit... 38 0.071
ref|XP_292851.1| similar to mastigoneme-like protein [Homo sapiens] 37 0.12
ref|ZP_00140552.1| COG4603: ABC-type uncharacterized transport s... 37 0.16
ref|NP_542197.1| alpha 1 type XI collagen isoform C preproprotei... 37 0.16
>gb|AAM92813.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|31430598|gb|AAP52486.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1017
Score = 38.5 bits (88), Expect = 0.055
Identities = 28/75 (37%), Positives = 33/75 (43%), Gaps = 4/75 (5%)
Frame = +2
Query: 236 CPEPRHRPGYPAR*LGAEPPAAQPCRRHPKHCCRRGPVA-CYGRLAHAGPAHVVFG---R 403
C R PAR L A PP++ RR P+ R VA C RL P ++ G R
Sbjct: 840 CSSSSSRSSSPARRLAAPPPSSSSLRRVPRRPRLRAAVAGCPRRLLAGCPRRLLAGPGRR 899
Query: 404 RQGPAAKQQRRGGRP 448
R P RRG RP
Sbjct: 900 RPRPLVVPDRRGVRP 914
>ref|NP_871702.1| COLlagen structural gene (col-95) [Caenorhabditis elegans]
gi|28316223|emb|CAD66222.1| C. elegans COL-95 protein
(corresponding sequence Y41C4A.16) [Caenorhabditis
elegans]
Length = 309
Score = 38.1 bits (87), Expect = 0.071
Identities = 55/174 (31%), Positives = 60/174 (33%), Gaps = 33/174 (18%)
Frame = +2
Query: 107 QVTRDFGGDSSQGSDSSNGSGRGVILRSIPRGPCLQGPVAGVFCPEPRHRPGYP-AR*LG 283
Q DF + SS GSG G G CL GP P RPG P A L
Sbjct: 81 QAGYDFDTGAVDSFASSGGSGGG----GSCSGCCLPGPAGPSGAPGKPGRPGRPGAGGLP 136
Query: 284 AEP--PAAQPCRR-HPKHC--CRRGPVACYGRLAHAG-------PAHVVFGRRQGPAAKQ 427
P P AQPC P C C +GP G G P H GPA +
Sbjct: 137 GNPGRPPAQPCHPITPPPCRPCPQGPPGAPGSPGPQGNAGAPGQPGHGGGSGAPGPAGPK 196
Query: 428 QRRG-----------GRP---------QG*R*QVGPSMRRDVPGLSMCDGAGGG 529
+RG GRP G Q GP + PG S GA GG
Sbjct: 197 GQRGAPGHPGQAGSPGRPGVDAQSQSNPGAPGQAGP---QGPPGPSGAPGAPGG 247
>ref|XP_292851.1| similar to mastigoneme-like protein [Homo sapiens]
Length = 979
Score = 37.4 bits (85), Expect = 0.12
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Frame = -3
Query: 453 PCGRPPRRCCFAAGPWRL-PNTTCAGPA*ARRP*QATGPRRQQCFGWRRHGWAAGGSA-- 283
PC P C AAGPW L P + + A R +AT + G AA G A
Sbjct: 839 PC--PAGSECPAAGPWMLYPYSPARLDSAAPRGQRATRAIPARWATTALQGLAAQGPAQQ 896
Query: 282 -PSQRAG*PGRCR--GSGQNTPATGP*RQGPRGIDRRMTPRPLPFELSLPCELSPPKSRV 112
PS+ A PG+ + GS TP+ +DRR++ P P LS C P+ +V
Sbjct: 897 GPSEAAAGPGQLKTAGSALRTPSVPC-------LDRRVSGLPAPNALSGACSFEGPRCKV 949
Query: 111 T 109
+
Sbjct: 950 S 950
>ref|ZP_00140552.1| COG4603: ABC-type uncharacterized transport system, permease
component [Pseudomonas aeruginosa UCBPP-PA14]
Length = 659
Score = 37.0 bits (84), Expect = 0.16
Identities = 37/105 (35%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Frame = +2
Query: 200 GPCLQGPVAGVFCPEPRHRPGYPAR*LGAEPPAAQPCRRHPKHCCRRGPVACYGRLAHAG 379
GP QG AG P R G R G +P QP HP+ GP G G
Sbjct: 149 GPAAQGAGAGRGDHPPFRREGPGCRGAGTQPFRRQPAEVHPRPRDPPGPAPAGG-----G 203
Query: 380 PAHVVFGRRQGPAAKQQR------RGGRPQG*R*QVGPSMRRDVP 496
+H+ GRR+G A + R G P G R GP RR VP
Sbjct: 204 ASHLGRGRRRGGADPPRADCLARCRYGDPGGLR---GP--RRAVP 243
>ref|NP_542197.1| alpha 1 type XI collagen isoform C preproprotein; collagen XI,
alpha-1 polypeptide [Homo sapiens]
Length = 1767
Score = 37.0 bits (84), Expect = 0.16
Identities = 41/134 (30%), Positives = 50/134 (36%)
Frame = +2
Query: 125 GGDSSQGSDSSNGSGRGVILRSIPRGPCLQGPVAGVFCPEPRHRPGYPAR*LGAEPPAAQ 304
GGD G G P+GP QGPV P P+ PG PP
Sbjct: 868 GGDGPPGPPGERG----------PQGP--QGPVG---FPGPKGPPG---------PPGRM 903
Query: 305 PCRRHPKHCCRRGPVACYGRLAHAGPAHVVFGRRQGPAAKQQRRGGRPQG*R*QVGPSMR 484
C HP +RG G+ GP VV QGP + G R G GP
Sbjct: 904 GCPGHPG---QRGETGFQGKTGPPGPGGVV--GPQGPTGETGPIGER--GHPGPPGPPGE 956
Query: 485 RDVPGLSMCDGAGG 526
+ +PG + +GA G
Sbjct: 957 QGLPGAAGKEGAKG 970
