KCC002596A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002596A_C01 KCC002596A_c01
cacctcggcggagttccacccgcagcactgcaacgttttcgcctacagcagcagcaaggg
atgcattcggctggcggacaTGCGCAACGCGGCGCTGTGCGACCGGCACTCGAAAGCGTT
TGAGGAGCAGGAGTCCCAGGCGAACAAGTCGTTCTTCTCGGAGATCATCGCCAGCATCAG
CGACATCACATTCAGCCGGGATGGGCGATACATCCTGAGCAGGGACTACATGACGTTGAA
GCTGTGGGACCTGGCGAAGGAGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCT
GCGCGCGCGGTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTG
CATGAGCGGCCGCGGCGACGCGATCGCGACTGGCTCGTACAACAACCTGTTCCGTGTGTT
CGGCGCCTGGAACGGCGCGGACCTGACGCTTGAAGCGTCGCGCGACCCGATGCGGAAGCG
CCTGCAGCAGCCGGCCAAGACAAACCGGTTCGCCATCCGCAACAAGAACGGGCCCAGCAA
GGGGGGGCGGGCAAACGAGCAGTCGGAGTCGGGCACGGACTACGCCTCCAAGCTGCTGCA
CCTGGCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002596A_C01 KCC002596A_c01
         (609 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_564033.1| type 2A protein serine/threonine phosphatase 55...   259  3e-68
ref|NP_849681.1| type 2A protein serine/threonine phosphatase 55...   259  3e-68
gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A...   255  3e-67
gb|AAG29596.1|AF196289_1 Ser/Thr specific protein phosphatase 2A...   251  7e-66
pir||T02952 probable protein phosphatase 2A B regulatory chain 5...   247  8e-65

>ref|NP_564033.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory
           subunit [Arabidopsis thaliana] gi|1408460|gb|AAB60777.1|
           type 2A protein serine/threonine phosphatase 55 kDa B
           regulatory subunit gi|15010728|gb|AAK74023.1|
           At1g17720/F11A6_14 [Arabidopsis thaliana]
           gi|23308483|gb|AAN18211.1| At1g17720/F11A6_14
           [Arabidopsis thaliana]
          Length = 501

 Score =  259 bits (661), Expect = 3e-68
 Identities = 130/209 (62%), Positives = 160/209 (76%), Gaps = 7/209 (3%)
 Frame = +2

Query: 2   TSAEFHPQHCNVFAYSSSKGCIRLADMRNAALCDRHSKAFEEQESQANKSFFSEIIASIS 181
           TSAEFHP HCN+ AYSSSKG IRL DMR +ALCD H+K FEE E+  ++SFF+EIIASIS
Sbjct: 275 TSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASIS 334

Query: 182 DITFSRDGRYILSRDYMTLKLWDLAKENAPVATYNVHEHLRARLCDLYENDSIFDKFDCC 361
           DI FS+DGRYILSRDYMTLKLWD+  ++ PVA+Y VHEHLR RLCDLYENDSIFDKF+CC
Sbjct: 335 DIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECC 394

Query: 362 MSGRGDAIATGSYNNLFRVFGAWNGAD--LTLEASRDPMRKRLQQPAKTNR-----FAIR 520
           +SG G  +ATGSY+NLFRVFGA  G+    TLEAS++PMR+++Q PA+ +R       + 
Sbjct: 395 LSGDGLRVATGSYSNLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVV 454

Query: 521 NKNGPSKGGRANEQSESGTDYASKLLHLA 607
            +   S G  AN    +  D+ +KLLH+A
Sbjct: 455 RRGSESPGTEAN---GNAYDFTTKLLHMA 480

>ref|NP_849681.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory
           subunit [Arabidopsis thaliana] gi|25518063|pir||B86312
           type 2A protein serine/threonine phosphatase 55K
           regulatory chain F11A6.6 - Arabidopsis thaliana
           gi|9802743|gb|AAF99812.1|AC034257_4 type 2A protein
           serine/threonine phosphatase 55kDa B regulatory subunit
           [Arabidopsis thaliana]
           gi|13877637|gb|AAK43896.1|AF370519_1 type 2A protein
           serine/threonine phosphatase 55kDa B regulatory subunit
           [Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type
           2A protein serine/threonine phosphatase 55kDa B
           regulatory subunit [Arabidopsis thaliana]
          Length = 500

 Score =  259 bits (661), Expect = 3e-68
 Identities = 130/209 (62%), Positives = 160/209 (76%), Gaps = 7/209 (3%)
 Frame = +2

Query: 2   TSAEFHPQHCNVFAYSSSKGCIRLADMRNAALCDRHSKAFEEQESQANKSFFSEIIASIS 181
           TSAEFHP HCN+ AYSSSKG IRL DMR +ALCD H+K FEE E+  ++SFF+EIIASIS
Sbjct: 274 TSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASIS 333

Query: 182 DITFSRDGRYILSRDYMTLKLWDLAKENAPVATYNVHEHLRARLCDLYENDSIFDKFDCC 361
           DI FS+DGRYILSRDYMTLKLWD+  ++ PVA+Y VHEHLR RLCDLYENDSIFDKF+CC
Sbjct: 334 DIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECC 393

Query: 362 MSGRGDAIATGSYNNLFRVFGAWNGAD--LTLEASRDPMRKRLQQPAKTNR-----FAIR 520
           +SG G  +ATGSY+NLFRVFGA  G+    TLEAS++PMR+++Q PA+ +R       + 
Sbjct: 394 LSGDGLRVATGSYSNLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVV 453

Query: 521 NKNGPSKGGRANEQSESGTDYASKLLHLA 607
            +   S G  AN    +  D+ +KLLH+A
Sbjct: 454 RRGSESPGTEAN---GNAYDFTTKLLHMA 479

>gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha
           isoform [Medicago sativa subsp. x varia]
          Length = 515

 Score =  255 bits (652), Expect = 3e-67
 Identities = 125/207 (60%), Positives = 158/207 (75%), Gaps = 5/207 (2%)
 Frame = +2

Query: 2   TSAEFHPQHCNVFAYSSSKGCIRLADMRNAALCDRHSKAFEEQESQANKSFFSEIIASIS 181
           TSAEFHP HCN  AYSSSKG IRL D+R +ALCD H+K FEEQE+  ++SFF+EIIASIS
Sbjct: 288 TSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASIS 347

Query: 182 DITFSRDGRYILSRDYMTLKLWDLAKENAPVATYNVHEHLRARLCDLYENDSIFDKFDCC 361
           DI F++DGRYILSRDYMTLKLWD+  ++ PVATY VHEHLR RLCDLYENDSIFDKF+CC
Sbjct: 348 DIKFAKDGRYILSRDYMTLKLWDINMDSGPVATYRVHEHLRPRLCDLYENDSIFDKFECC 407

Query: 362 MSGRGDAIATGSYNNLFRVFGAWNGAD--LTLEASRDPMRKRLQQPAKTNRFAIRNKNGP 535
           +SG G  ++TGSY+NLFRVFG   G+    TLEAS++PMR+++  P++ +R    +    
Sbjct: 408 LSGDGSRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSIGNSITRV 467

Query: 536 SKGGRAN---EQSESGTDYASKLLHLA 607
            + G  N   + + +  D+ +KLLHLA
Sbjct: 468 VRRGAENTSVDANGNSFDFTTKLLHLA 494

>gb|AAG29596.1|AF196289_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit beta
           isoform [Medicago sativa subsp. x varia]
          Length = 518

 Score =  251 bits (640), Expect = 7e-66
 Identities = 124/207 (59%), Positives = 157/207 (74%), Gaps = 5/207 (2%)
 Frame = +2

Query: 2   TSAEFHPQHCNVFAYSSSKGCIRLADMRNAALCDRHSKAFEEQESQANKSFFSEIIASIS 181
           TSAEFHP HCN  AYSSSKG IRL D+R +ALCD H+K FEEQE+  ++SFF+EIIASIS
Sbjct: 291 TSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASIS 350

Query: 182 DITFSRDGRYILSRDYMTLKLWDLAKENAPVATYNVHEHLRARLCDLYENDSIFDKFDCC 361
           DI F +DGRYILSRDYMTLKLWD+  ++ PVATY VHE+LR +LCDLYENDSIFDKF+CC
Sbjct: 351 DIKFGKDGRYILSRDYMTLKLWDINMDSGPVATYQVHEYLRPKLCDLYENDSIFDKFECC 410

Query: 362 MSGRGDAIATGSYNNLFRVFGAWNGAD--LTLEASRDPMRKRLQQPAKTNRFAIRNKNGP 535
           +SG G  +ATGSY+NLFRVFG   G+    TLEAS++PMR+++  P++ +R    +    
Sbjct: 411 LSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRV 470

Query: 536 SKGGRAN---EQSESGTDYASKLLHLA 607
            + G  N   + + +  D+ +KLLHLA
Sbjct: 471 VRRGAENPGVDANGNSFDFTTKLLHLA 497

>pir||T02952 probable protein phosphatase 2A B regulatory chain 55K - rice
           gi|3421413|gb|AAC32204.1| protein phosphatase 2A 55 kDa
           B regulatory subunit [Oryza sativa]
           gi|3421415|gb|AAC32205.1| protein phosphatase 2A 55 kDa
           B regulatory subunit [Oryza sativa]
          Length = 531

 Score =  247 bits (631), Expect = 8e-65
 Identities = 122/206 (59%), Positives = 152/206 (73%), Gaps = 4/206 (1%)
 Frame = +2

Query: 2   TSAEFHPQHCNVFAYSSSKGCIRLADMRNAALCDRHSKAFEEQESQANKSFFSEIIASIS 181
           T AEFHP HCN  AYSSSKG IRL D+R +ALCD H+K FEE E+  ++SFF+EIIAS+S
Sbjct: 301 TCAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDNHAKLFEEHEAPGSRSFFTEIIASVS 360

Query: 182 DITFSRDGRYILSRDYMTLKLWDLAKENAPVATYNVHEHLRARLCDLYENDSIFDKFDCC 361
           DI F+RDGR+ILSRDYMTLKLWD+  ++ PVAT+ VHE+LR +LCDLYENDSIFDKF+CC
Sbjct: 361 DIKFARDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECC 420

Query: 362 MSGRGDAIATGSYNNLFRVFGAWNGA--DLTLEASRDPMRKRLQQPAKTNRFAIRNKNGP 535
           +SG G  +ATGSY+NLFRVFG   G+    TLEASR+PMR+++  P +  R         
Sbjct: 421 LSGDGLRVATGSYSNLFRVFGCTPGSAEATTLEASRNPMRRQVANPTRPARTLTSLTRAV 480

Query: 536 SKGGRANEQSESGTDY--ASKLLHLA 607
            +GG       +G  Y  ++KLLHLA
Sbjct: 481 RRGGENPGVDANGNSYDLSTKLLHLA 506



EST assemble image


clone accession position
1 HCL065g03_r AV643213 1 512
2 MXL058d03_r BP096417 216 609




Chlamydomonas reinhardtii
Kazusa DNA Research Institute