KCC002584A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002584A_C01 KCC002584A_c01
CTGGAAAACACTGCTTACACCGTCTGTAAGCCAACTGGCGCCCTATCGGGTCACCTGCTC
CTGCGCCGTGAACTGGCTCCTTCCCTCCCGTGCACAAGCCAGCGCCTGGCCGGCCACATT
GCTGCCACGCAATCGTTGTGGCATCAGTACTAGCGTGGACGTTCACACGCTCACTGTTCG
TCTGGACTTGTCTAGCCTAGCATCCTGCCTACTTCCTTTCCAAATGCCTAGCCTACTGCC
TAGCTACCTGCAAGCTCTTACAGCTCGATGGAAACGCGTTACCGGTATCGTATGTCCTTG
GGAAAAGGAACCACCGCATCGCAAACTCACTGCAGCTTCCATTGCCGCCTCTCCCATGAA
CTCCATCACAGTCCCCTTTCCCGGTCAGGTCATGCTAAGAAACAGGTCAATGGGTGGGTC
ATTAACACACGGTACGTACAGAACAGTCATGCGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002584A_C01 KCC002584A_c01
         (456 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH46714.1| Similar to transcription elongation regulator 1 (...    36  0.23
ref|XP_314076.1| ENSANGP00000015611 [Anopheles gambiae] gi|30176...    33  1.1
sp|P22327|JSP1_TRINI ACIDIC JUVENILE HORMONE-SUPPRESSIBLE PROTEI...    32  4.3
gb|AAA27884.1| juvenile hormone-related protein                        32  4.3
ref|NP_868695.1| hypothetical protein-putative transmembrane pro...    31  5.6

>gb|AAH46714.1| Similar to transcription elongation regulator 1 (CA150) [Xenopus
           laevis]
          Length = 553

 Score = 35.8 bits (81), Expect = 0.23
 Identities = 31/131 (23%), Positives = 53/131 (39%)
 Frame = +2

Query: 8   TLLTPSVSQLAPYRVTCSCAVNWLLPSRAQASAWPATLLPRNRCGISTSVDVHTLTVRLD 187
           T  TP+ SQ +    T S ++   +PS +      +  +P     IS +  + T++    
Sbjct: 212 TSTTPTTSQASSTNTTTSNSILQAIPSSSAPEQTQSVSMPVTVSSISVATSLPTVSSVQS 271

Query: 188 LSSLASCLLPFQMPSLLPSYLQALTARWKRVTGIVCPWEKEPPHRKLTAASIAASPMNSI 367
           LS+  S +LP  +   +P    A+TA          P    PP R          P+  +
Sbjct: 272 LSAQLSQVLPHTVSHAVPQPTAAITA---------FPPVMVPPFR---------VPLPGM 313

Query: 368 TVPFPGQVMLR 400
            +P PG  M++
Sbjct: 314 PIPLPGVAMMQ 324

>ref|XP_314076.1| ENSANGP00000015611 [Anopheles gambiae] gi|30176689|gb|EAA09553.2|
           ENSANGP00000015611 [Anopheles gambiae str. PEST]
          Length = 427

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 21/46 (45%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
 Frame = +2

Query: 206 CLLPFQMP-SLLPSYLQALTARWKRVTGIVCPWEKEPPHRKLTAAS 340
           CL   Q P S LPS  +A  A  +RVT + CP  ++PPHR  T  S
Sbjct: 173 CLPEDQWPESPLPSSCEAAAAE-QRVTTVACPVTEKPPHRIFTLYS 217

>sp|P22327|JSP1_TRINI ACIDIC JUVENILE HORMONE-SUPPRESSIBLE PROTEIN 1 PRECURSOR (AJHSP1)
           gi|102937|pir||A36269 acidic juvenile
           hormone-suppressible protein 1 precursor - cabbage
           looper
          Length = 624

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +2

Query: 212 LPFQMPSLLPSYLQALTAR-----WKRVTGIVCPWEKEPPHRK 325
           +P  +PS+L  Y  AL        WKRV G+   W+++ PH K
Sbjct: 407 IPLVVPSVLEHYQTALRDPAFYMIWKRVLGLFQQWQEKLPHYK 449

>gb|AAA27884.1| juvenile hormone-related protein
          Length = 704

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +2

Query: 212 LPFQMPSLLPSYLQALTAR-----WKRVTGIVCPWEKEPPHRK 325
           +P  +PS+L  Y  AL        WKRV G+   W+++ PH K
Sbjct: 407 IPLVVPSVLEHYQTALRDPAFYMIWKRVLGLFQQWQEKLPHYK 449

>ref|NP_868695.1| hypothetical protein-putative transmembrane protein [Pirellula sp.]
           gi|32446243|emb|CAD76072.1| hypothetical
           protein-putative transmembrane protein [Pirellula sp.]
          Length = 277

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 185 DLSSLASCLLPFQMPSLLPSYLQALTARWKRV 280
           +L S+AS   P  +P+L+ +YL  + +RWKR+
Sbjct: 160 ELVSIASYTTPAGVPALIANYLVMMKSRWKRL 191



EST assemble image


clone accession position
1 HCL063g06_r AV643102 1 456
2 LCL082h12_r AV630703 1 362




Chlamydomonas reinhardtii
Kazusa DNA Research Institute