KCC002582A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002582A_C01 KCC002582A_c01
gcacggtgaggccCGCCTGCGGCCTGGGGCCGCCGCAGCCCGACGGCGGCGTGGGGCCGC
CGCCCACAACCGTCAAGGATGACGTGTCGTTCGCCACCTTCATATCCAGGCAGCTGCGGC
ACGTGGTGACGTCCACCTTCCTCCCGTCCGGCTACCCGGCCACCACCGGTGACAACTACA
TAAATTTCATGGCCTGGCAGGGCCTCAACAACATCGCGGTGACCGCCAACTCGGTGCTGG
CCTCCACCTTCATGCTGTACGCGGTGGGGCTGGGCGCGGGAGCCATACCCACCGCCGGGG
CGCTCAACTGGGTGCTCAAGGACGGCATGGGGCAGCTGGGCACGCTGGTGTTCGGCAAGA
CCATTGCGCACAACTTCGACGTGCACTCCAAGACCTGGTTCTTCCTGTCTGCGGTGCTAC
TCCAGGCTGCTGCGGCGCTGGAGATGCTGACGGTGCTGGTGCCGGGCCACTTCCTGCTCA
TGGGCTCGCTGGCAAACATGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002582A_C01 KCC002582A_c01
         (501 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP40410.1| unknown protein [Arabidopsis thaliana] gi|3079409...   115  2e-25
ref|NP_190175.1| expressed protein [Arabidopsis thaliana] gi|112...   115  2e-25
emb|CAE02375.1| OSJNBb0096E05.25 [Oryza sativa (japonica cultiva...   105  4e-22
dbj|BAB16449.1| P0019D06.6 [Oryza sativa (japonica cultivar-group)]    78  5e-14
ref|NP_568713.1| expressed protein [Arabidopsis thaliana] gi|166...    72  3e-12

>gb|AAP40410.1| unknown protein [Arabidopsis thaliana] gi|30794095|gb|AAP40490.1|
           unknown protein [Arabidopsis thaliana]
          Length = 608

 Score =  115 bits (289), Expect = 2e-25
 Identities = 57/128 (44%), Positives = 83/128 (64%)
 Frame = +3

Query: 111 QLRHVVTSTFLPSGYPATTGDNYINFMAWQGLNNIAVTANSVLASTFMLYAVGLGAGAIP 290
           Q R+++T   LP G+P +   +Y+++  W+G+  IA   + VLA+  +LYAVGLG GAIP
Sbjct: 189 QCRNLLTQFLLPEGFPNSVTSDYLDYSLWRGVQGIASQISGVLATQSLLYAVGLGKGAIP 248

Query: 291 TAGALNWVLKDGMGQLGTLVFGKTIAHNFDVHSKTWFFLSAVLLQAAAALEMLTVLVPGH 470
           TA A+NWVLKDG+G L  ++  K   H FDVH K W   + +L  AA  +EMLT + P  
Sbjct: 249 TAAAINWVLKDGIGYLSKIMLSKYGRH-FDVHPKGWRLFADLLENAAFGMEMLTPVFPQF 307

Query: 471 FLLMGSLA 494
           F+++G+ A
Sbjct: 308 FVMIGAAA 315

>ref|NP_190175.1| expressed protein [Arabidopsis thaliana] gi|11290096|pir||T47529
           hypothetical protein F16L2.100 - Arabidopsis thaliana
           gi|7339490|emb|CAB82813.1| putative protein [Arabidopsis
           thaliana]
          Length = 631

 Score =  115 bits (289), Expect = 2e-25
 Identities = 57/128 (44%), Positives = 83/128 (64%)
 Frame = +3

Query: 111 QLRHVVTSTFLPSGYPATTGDNYINFMAWQGLNNIAVTANSVLASTFMLYAVGLGAGAIP 290
           Q R+++T   LP G+P +   +Y+++  W+G+  IA   + VLA+  +LYAVGLG GAIP
Sbjct: 189 QCRNLLTQFLLPEGFPNSVTSDYLDYSLWRGVQGIASQISGVLATQSLLYAVGLGKGAIP 248

Query: 291 TAGALNWVLKDGMGQLGTLVFGKTIAHNFDVHSKTWFFLSAVLLQAAAALEMLTVLVPGH 470
           TA A+NWVLKDG+G L  ++  K   H FDVH K W   + +L  AA  +EMLT + P  
Sbjct: 249 TAAAINWVLKDGIGYLSKIMLSKYGRH-FDVHPKGWRLFADLLENAAFGMEMLTPVFPQF 307

Query: 471 FLLMGSLA 494
           F+++G+ A
Sbjct: 308 FVMIGAAA 315

>emb|CAE02375.1| OSJNBb0096E05.25 [Oryza sativa (japonica cultivar-group)]
          Length = 658

 Score =  105 bits (261), Expect = 4e-22
 Identities = 53/129 (41%), Positives = 77/129 (59%)
 Frame = +3

Query: 108 RQLRHVVTSTFLPSGYPATTGDNYINFMAWQGLNNIAVTANSVLASTFMLYAVGLGAGAI 287
           R+   V     LP GYP +   +Y+ +  W+G+  IA   + VL++  +LYAVGLG GAI
Sbjct: 186 RRCATVAVQLLLPDGYPDSVSSDYLQYSLWRGVQGIASQISGVLSTQALLYAVGLGKGAI 245

Query: 288 PTAGALNWVLKDGMGQLGTLVFGKTIAHNFDVHSKTWFFLSAVLLQAAAALEMLTVLVPG 467
           PTA A+NWVLKDG+G L  ++  K    +FDV+ K W   + +L   A  LE+LT + P 
Sbjct: 246 PTAAAVNWVLKDGLGYLSKILLSK-FGRHFDVNPKGWRLFADLLENTAYGLEILTPVFPH 304

Query: 468 HFLLMGSLA 494
            F+ +G+ A
Sbjct: 305 LFVPIGAAA 313

>dbj|BAB16449.1| P0019D06.6 [Oryza sativa (japonica cultivar-group)]
          Length = 641

 Score = 78.2 bits (191), Expect = 5e-14
 Identities = 40/126 (31%), Positives = 65/126 (50%), Gaps = 6/126 (4%)
 Frame = +3

Query: 141 LPSGYPATTGDNYINFMAWQGLNNIA------VTANSVLASTFMLYAVGLGAGAIPTAGA 302
           LP+G+P +  D+Y+ +M WQ   N+       +  +++L   + L  +  G  A  +A A
Sbjct: 255 LPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKVYYNLNKLTKGTSAAASAAA 314

Query: 303 LNWVLKDGMGQLGTLVFGKTIAHNFDVHSKTWFFLSAVLLQAAAALEMLTVLVPGHFLLM 482
           + WV KDG+G  G L+ G      FD   K W   +  +  A +  E++T L PG+FL +
Sbjct: 315 IRWVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPL 374

Query: 483 GSLANM 500
            SL N+
Sbjct: 375 ASLGNL 380

>ref|NP_568713.1| expressed protein [Arabidopsis thaliana] gi|16604643|gb|AAL24114.1|
           unknown protein [Arabidopsis thaliana]
           gi|23296703|gb|AAN13151.1| unknown protein [Arabidopsis
           thaliana]
          Length = 497

 Score = 72.4 bits (176), Expect = 3e-12
 Identities = 38/124 (30%), Positives = 66/124 (52%), Gaps = 1/124 (0%)
 Frame = +3

Query: 132 STFLPSGYPATTGDNYINFMAWQGLNNIAVTANSVLASTFMLYAVGLGAGAIPTAG-ALN 308
           S  +P G+P +  ++Y+ +M W+ L +    A  V  +  +L +VG    +  +A  A+N
Sbjct: 110 SYVVPEGFPGSVNESYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGASRNSSASAAVAIN 169

Query: 309 WVLKDGMGQLGTLVFGKTIAHNFDVHSKTWFFLSAVLLQAAAALEMLTVLVPGHFLLMGS 488
           W+LKDG G++G ++F +     FD   K   F   +L++  A +E+ T  VP  FL +  
Sbjct: 170 WILKDGAGRVGKMLFARQ-GKKFDYDLKQLRFAGDLLMELGAGVELATAAVPHLFLPLAC 228

Query: 489 LANM 500
            AN+
Sbjct: 229 AANV 232



EST assemble image


clone accession position
1 MXL017e05_r BP094053 1 316
2 HCL063e08_r AV643089 14 501




Chlamydomonas reinhardtii
Kazusa DNA Research Institute