Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002578A_C01 KCC002578A_c01
(555 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179464.1| small nuclear ribonucleo protein E -related [Ar... 143 2e-33
ref|NP_567844.1| small nuclear ribonucleo protein homolog [Arabi... 143 2e-33
pir||F85354 small nuclear ribonucleoprotein homolog [imported] -... 140 1e-32
ref|XP_311506.1| ENSANGP00000022836 [Anopheles gambiae] gi|21294... 124 6e-28
gb|AAH49062.1| Similar to small nuclear ribonucleoprotein E [Dan... 124 1e-27
>ref|NP_179464.1| small nuclear ribonucleo protein E -related [Arabidopsis thaliana]
gi|25411897|pir||A84568 probable small nuclear
ribonucleoprotein E [imported] - Arabidopsis thaliana
gi|4185140|gb|AAD08943.1| putative small nuclear
ribonucleoprotein E [Arabidopsis thaliana]
gi|21592486|gb|AAM64436.1| putative small nuclear
ribonucleoprotein E [Arabidopsis thaliana]
gi|26452632|dbj|BAC43399.1| putative small nuclear
ribonucleoprotein E [Arabidopsis thaliana]
gi|28973515|gb|AAO64082.1| putative small nuclear
ribonucleoprotein E [Arabidopsis thaliana]
Length = 88
Score = 143 bits (360), Expect = 2e-33
Identities = 68/86 (79%), Positives = 79/86 (91%)
Frame = +2
Query: 113 ATKVQKIMTQPINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVSM 292
+TKVQ+IMTQPINL+FRFLQSK ++QIWLF+Q DLR+EGRI GFDEYMNLVLDEAEEVS+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSI 62
Query: 293 KRKTRKTLGRILLKGDNITLIQTTGR 370
K+ TRK LGRILLKGDNITL+ TG+
Sbjct: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
>ref|NP_567844.1| small nuclear ribonucleo protein homolog [Arabidopsis thaliana]
gi|21593343|gb|AAM65292.1| small nuclear
ribonucleoprotein homolog [Arabidopsis thaliana]
Length = 88
Score = 143 bits (360), Expect = 2e-33
Identities = 68/86 (79%), Positives = 79/86 (91%)
Frame = +2
Query: 113 ATKVQKIMTQPINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVSM 292
+TKVQ+IMTQPINL+FRFLQSK ++QIWLF+Q DLR+EGRI GFDEYMNLVLDEAEEVS+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSI 62
Query: 293 KRKTRKTLGRILLKGDNITLIQTTGR 370
K+KTRK LGRILLKGDNITL+ G+
Sbjct: 63 KKKTRKPLGRILLKGDNITLMMNAGK 88
>pir||F85354 small nuclear ribonucleoprotein homolog [imported] - Arabidopsis
thaliana gi|7269933|emb|CAB81026.1| small nuclear
ribonucleoprotein homolog [Arabidopsis thaliana]
Length = 86
Score = 140 bits (352), Expect = 1e-32
Identities = 67/81 (82%), Positives = 77/81 (94%)
Frame = +2
Query: 113 ATKVQKIMTQPINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVSM 292
+TKVQ+IMTQPINL+FRFLQSK ++QIWLF+Q DLR+EGRI GFDEYMNLVLDEAEEVS+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSI 62
Query: 293 KRKTRKTLGRILLKGDNITLI 355
K+KTRK LGRILLKGDNITL+
Sbjct: 63 KKKTRKPLGRILLKGDNITLM 83
>ref|XP_311506.1| ENSANGP00000022836 [Anopheles gambiae] gi|21294986|gb|EAA07131.1|
ENSANGP00000022836 [Anopheles gambiae str. PEST]
Length = 90
Score = 124 bits (312), Expect = 6e-28
Identities = 55/81 (67%), Positives = 73/81 (89%)
Frame = +2
Query: 116 TKVQKIMTQPINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVSMK 295
+KVQK+M QPINL+FR+LQ++ +VQ+WL++ LR+EG I+GFDEYMNLVLDEAEE ++K
Sbjct: 6 SKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEFNIK 65
Query: 296 RKTRKTLGRILLKGDNITLIQ 358
++TR+ LGRI+LKGDNITLIQ
Sbjct: 66 KQTRRQLGRIMLKGDNITLIQ 86
>gb|AAH49062.1| Similar to small nuclear ribonucleoprotein E [Danio rerio]
Length = 92
Score = 124 bits (310), Expect = 1e-27
Identities = 55/81 (67%), Positives = 72/81 (87%)
Frame = +2
Query: 119 KVQKIMTQPINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVSMKR 298
KVQK+M QPINL+FR+LQ++ ++ +WL++Q ++R+EG IIGFDEYMNLVLD+AEEV MK
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 299 KTRKTLGRILLKGDNITLIQT 361
K RK LGRI+LKGDNITL+Q+
Sbjct: 69 KNRKPLGRIMLKGDNITLLQS 89
