Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002544A_C01 KCC002544A_c01
(508 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86164.1| B1140D12.12 [Oryza sativa (japonica cultivar-gro... 38 0.063
ref|NP_003066.2| SWI/SNF-related matrix-associated actin-depende... 30 0.18
ref|ZP_00031479.1| COG2942: N-acyl-D-glucosamine 2-epimerase [Bu... 37 0.18
gb|AAF65459.1|AF245484_1 OSE2 [Oryza sativa] 37 0.18
dbj|BAC86657.1| unnamed protein product [Homo sapiens] 37 0.18
>dbj|BAB86164.1| B1140D12.12 [Oryza sativa (japonica cultivar-group)]
Length = 227
Score = 38.1 bits (87), Expect = 0.063
Identities = 32/89 (35%), Positives = 33/89 (36%), Gaps = 9/89 (10%)
Frame = +3
Query: 267 RATRSWLARQRLWSSTSS*RRASSRPCPAPMWKQ*RHCQRRAHPPKLCRVAPARL*CRTL 446
R R A L SS + RR S P P RR PP AP RL R L
Sbjct: 132 RVARDATAAAALASSATPRRRPSPPPHPTTA-----RLLRRTLPPLASSAAPRRLIPRRL 186
Query: 447 GVWVPPPPPSPLLL---------PXPPSP 506
PPPPP P L P PP P
Sbjct: 187 SPPPPPPPPPPRLASSVAPRRRSPPPPPP 215
>ref|NP_003066.2| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin c2 isoform a; mammalian chromatin remodeling
complex BRG1-associated factor 170; chromatin remodeling
complex BAF170 subunit; SWI3-like protein; SWI/SNF
complex 170 kDa subunit [Homo sapiens]
gi|20072796|gb|AAH26222.1| SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
c2, isoform a [Homo sapiens]
Length = 1214
Score = 30.4 bits (67), Expect(2) = 0.18
Identities = 27/83 (32%), Positives = 35/83 (41%), Gaps = 5/83 (6%)
Frame = +2
Query: 179 IASLPASLLTQPRGRGMPRGNPNVWKKHGQSYSELAGSSTAVEQHQQLA----PRKLPP- 343
+A PAS++ P G G P G+ ++ GQ+ STA Q QQ A P +PP
Sbjct: 986 LAVAPASVVPAPAGSGAPPGSLGPSEQIGQA------GSTAGPQQQQPAGAPQPGAVPPG 1039
Query: 344 VSRADVEAVKALPAAGTPAKAMP 412
V P TP MP
Sbjct: 1040 VPPPGPHGPSPFPNQQTPPSMMP 1062
Score = 25.0 bits (53), Expect(2) = 0.18
Identities = 8/15 (53%), Positives = 12/15 (79%)
Frame = +3
Query: 447 GVWVPPPPPSPLLLP 491
G+ PPPPP+P ++P
Sbjct: 1084 GMPPPPPPPAPSIIP 1098
>ref|ZP_00031479.1| COG2942: N-acyl-D-glucosamine 2-epimerase [Burkholderia fungorum]
Length = 613
Score = 36.6 bits (83), Expect = 0.18
Identities = 23/69 (33%), Positives = 28/69 (40%)
Frame = +1
Query: 301 CGAAPAASAAQAPARVPRRCGSSEGTASGGHTRQSYAAWRRHVCDAEHLEYGFPLPRPAL 480
C A+ A+ PARV R + A H R+ RR A P PR +
Sbjct: 39 CALQHRAAGARLPARVFRSGAAVRPVAGSDHRRRPRPRQRRRARHASTARRTGPAPRRRV 98
Query: 481 CYYRRRRRR 507
C RRRR R
Sbjct: 99 CLQRRRRAR 107
>gb|AAF65459.1|AF245484_1 OSE2 [Oryza sativa]
Length = 217
Score = 36.6 bits (83), Expect = 0.18
Identities = 22/49 (44%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Frame = +1
Query: 241 PKCLEEAWAELLGAG-WLVNGCGAAPAASAAQAPARVPRRCGSSEGTAS 384
P+ EE W E+ GAG G G PAA+AA APA V G+ GT +
Sbjct: 27 PRTAEEVWKEITGAGVAAAAGVGLPPAAAAAAAPAVV---AGAGAGTGA 72
>dbj|BAC86657.1| unnamed protein product [Homo sapiens]
Length = 186
Score = 36.6 bits (83), Expect = 0.18
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Frame = +3
Query: 255 RSMGRATRSWLARQRLWSST--SS*RRASSRP----------CPAPMWKQ*RHCQRRAHP 398
RS R TR+W R R W +T RR + P P P +Q R R HP
Sbjct: 73 RSWARTTRAWPLRMRCWQTTRMKKTRRGRAAPQEALTRTSPGSPRPARRQGRWLPRSVHP 132
Query: 399 PKLCRVAPARL*CRTLGVWVPPPPPSPLLLPXP 497
C V P L C P P PLL P P
Sbjct: 133 ---C-VCPVGLHCGARATLTPLAAP-PLLPPEP 160
