KCC002540A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002540A_C01 KCC002540A_c01
ccggccgccgcaacatcttgatcacctcggctctgccgtacgtcaacaacgtgccgcacc
tggggaacatcatcggctgcGTGCTGTCTGCTGACGTGTACGCGCGCTACTGCCGCGCCC
GCGGCCACAACTGCATCTACGTGTGCGGCACCGACGAGTACGGCACGGCCACCGAGACCA
AGGCTCTGGAGGAGGGGCTGACGTGCCAGCAAATCTGCGACAAGTACCACGCCATCCACG
CCGGCATCTACCAGTGGTTCGACATTGCGTTCGACCGCTTCGGCCGCACGCCCACGCGCG
CCCAGACCAAGATCGCGCAGGACATCTTCAAGTCGCTGCAGTCGCGCGGGCAGCTGGTGC
AGCAAGAGATGCAGCAGCTGTACTCGGAGGCCGCCGGCAAGTTCCTGGCAGACCGCTTCG
TCACCGGCACATGCCCCAAGTGCGGGTACGAGGACGCCCGCGGCGACCAGTGCGACGGCT
GCGGCAACCTGCTGAACCCCACGGAGCTGATCCGGCCCAAGTGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002540A_C01 KCC002540A_c01
         (525 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_125952.2| similar to methionine-tRNA synthetase; methioni...   264  5e-70
ref|XP_216910.2| similar to methionine-tRNA synthetase; methioni...   264  6e-70
gb|AAH15011.1|AAH15011 methionine-tRNA synthetase [Homo sapiens]      262  2e-69
ref|NP_004981.2| methionine-tRNA synthetase; methionine tRNA lig...   262  2e-69
pir||JC5224 methionine-tRNA ligase (EC 6.1.1.10) - human gi|1702...   262  2e-69

>ref|XP_125952.2| similar to methionine-tRNA synthetase; methionine tRNA ligase;
           methionyl-tRNA synthetase [Homo sapiens] [Mus musculus]
          Length = 902

 Score =  264 bits (675), Expect = 5e-70
 Identities = 122/174 (70%), Positives = 143/174 (82%)
 Frame = +3

Query: 3   GRRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRARGHNCIYVCGTDEYGTATETK 182
           G RN+LITSALPYVNNVPHLGNIIGCVLSADV+ARYCR R  N +Y+CGTDEYGTATETK
Sbjct: 264 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRQWNTLYLCGTDEYGTATETK 323

Query: 183 ALEEGLTCQQICDKYHAIHAGIYQWFDIAFDRFGRTPTRAQTKIAQDIFKSLQSRGQLVQ 362
           A+EEGLT ++ICDKYHAIHA IY+WF I+FD FGRT T  QTKI QDIF+ L +RG +++
Sbjct: 324 AMEEGLTPREICDKYHAIHADIYRWFGISFDTFGRTTTPQQTKITQDIFQRLLTRGFVLR 383

Query: 363 QEMQQLYSEAAGKFLADRFVTGTCPKCGYEDARGDQCDGCGNLLNPTELIRPKC 524
             ++QL  E   +FLADRFV G CP CGYE+ARGDQCD CG L+N  EL +P+C
Sbjct: 384 DTVEQLRCERCARFLADRFVEGVCPFCGYEEARGDQCDRCGKLINAIELKKPQC 437

>ref|XP_216910.2| similar to methionine-tRNA synthetase; methionine tRNA ligase;
           methionyl-tRNA synthetase [Rattus norvegicus]
          Length = 916

 Score =  264 bits (674), Expect = 6e-70
 Identities = 123/174 (70%), Positives = 142/174 (80%)
 Frame = +3

Query: 3   GRRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRARGHNCIYVCGTDEYGTATETK 182
           G RN+LITSALPYVNNVPHLGNIIGCVLSADV+ARY R R  N +Y+CGTDEYGTATETK
Sbjct: 270 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 329

Query: 183 ALEEGLTCQQICDKYHAIHAGIYQWFDIAFDRFGRTPTRAQTKIAQDIFKSLQSRGQLVQ 362
           A+EEGLT Q+ICDKYHAIH  IY+WF+I+FD FGRT T  QTKI QDIF+ L +RG ++Q
Sbjct: 330 AMEEGLTPQEICDKYHAIHVDIYRWFNISFDTFGRTTTPLQTKITQDIFQRLLTRGFVLQ 389

Query: 363 QEMQQLYSEAAGKFLADRFVTGTCPKCGYEDARGDQCDGCGNLLNPTELIRPKC 524
             ++QL  E   +FLADRFV G CP CGYE+ARGDQCD CG L+N  EL RP+C
Sbjct: 390 DTVEQLRCEQCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAIELKRPQC 443

>gb|AAH15011.1|AAH15011 methionine-tRNA synthetase [Homo sapiens]
          Length = 899

 Score =  262 bits (670), Expect = 2e-69
 Identities = 123/174 (70%), Positives = 141/174 (80%)
 Frame = +3

Query: 3   GRRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRARGHNCIYVCGTDEYGTATETK 182
           G RN+LITSALPYVNNVPHLGNIIGCVLSADV+ARY R R  N +Y+CGTDEYGTATETK
Sbjct: 261 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 320

Query: 183 ALEEGLTCQQICDKYHAIHAGIYQWFDIAFDRFGRTPTRAQTKIAQDIFKSLQSRGQLVQ 362
           ALEEGLT Q+ICDKYH IHA IY+WF+I+FD FGRT T  QTKI QDIF+ L  RG ++Q
Sbjct: 321 ALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQ 380

Query: 363 QEMQQLYSEAAGKFLADRFVTGTCPKCGYEDARGDQCDGCGNLLNPTELIRPKC 524
             ++QL  E   +FLADRFV G CP CGYE+ARGDQCD CG L+N  EL +P+C
Sbjct: 381 DTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQC 434

>ref|NP_004981.2| methionine-tRNA synthetase; methionine tRNA ligase; methionyl-tRNA
           synthetase [Homo sapiens]
           gi|20178332|sp|P56192|SYM_HUMAN Methionyl-tRNA
           synthetase (Methionine--tRNA ligase) (MetRS)
           gi|7804468|dbj|BAA95668.1| methionyl tRNA synthetase
           [Homo sapiens] gi|12803161|gb|AAH02384.1|AAH02384
           methionine-tRNA synthetase [Homo sapiens]
           gi|13623455|gb|AAH06328.1|AAH06328 Unknown (protein for
           MGC:12889) [Homo sapiens]
           gi|15079642|gb|AAH11639.1|AAH11639 Unknown (protein for
           MGC:12828) [Homo sapiens]
           gi|15080151|gb|AAH11849.1|AAH11849 Unknown (protein for
           MGC:20313) [Homo sapiens] gi|30583515|gb|AAP36002.1|
           methionine-tRNA synthetase [Homo sapiens]
          Length = 900

 Score =  262 bits (670), Expect = 2e-69
 Identities = 123/174 (70%), Positives = 141/174 (80%)
 Frame = +3

Query: 3   GRRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRARGHNCIYVCGTDEYGTATETK 182
           G RN+LITSALPYVNNVPHLGNIIGCVLSADV+ARY R R  N +Y+CGTDEYGTATETK
Sbjct: 262 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 321

Query: 183 ALEEGLTCQQICDKYHAIHAGIYQWFDIAFDRFGRTPTRAQTKIAQDIFKSLQSRGQLVQ 362
           ALEEGLT Q+ICDKYH IHA IY+WF+I+FD FGRT T  QTKI QDIF+ L  RG ++Q
Sbjct: 322 ALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQ 381

Query: 363 QEMQQLYSEAAGKFLADRFVTGTCPKCGYEDARGDQCDGCGNLLNPTELIRPKC 524
             ++QL  E   +FLADRFV G CP CGYE+ARGDQCD CG L+N  EL +P+C
Sbjct: 382 DTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQC 435

>pir||JC5224 methionine-tRNA ligase (EC 6.1.1.10) - human
           gi|1702932|emb|CAA64381.1| yeast methionyl-tRNA
           synthetase homolog [Homo sapiens]
          Length = 900

 Score =  262 bits (670), Expect = 2e-69
 Identities = 123/174 (70%), Positives = 141/174 (80%)
 Frame = +3

Query: 3   GRRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRARGHNCIYVCGTDEYGTATETK 182
           G RN+LITSALPYVNNVPHLGNIIGCVLSADV+ARY R R  N +Y+CGTDEYGTATETK
Sbjct: 262 GERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETK 321

Query: 183 ALEEGLTCQQICDKYHAIHAGIYQWFDIAFDRFGRTPTRAQTKIAQDIFKSLQSRGQLVQ 362
           ALEEGLT Q+ICDKYH IHA IY+WF+I+FD FGRT T  QTKI QDIF+ L  RG ++Q
Sbjct: 322 ALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQ 381

Query: 363 QEMQQLYSEAAGKFLADRFVTGTCPKCGYEDARGDQCDGCGNLLNPTELIRPKC 524
             ++QL  E   +FLADRFV G CP CGYE+ARGDQCD CG L+N  EL +P+C
Sbjct: 382 DTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQC 435



EST assemble image


clone accession position
1 HCL054a06_r AV642567 1 525
2 LCL037c12_r AV628139 238 479




Chlamydomonas reinhardtii
Kazusa DNA Research Institute