KCC002537A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002537A_C01 KCC002537A_c01
cctactacgtggcgcccgaggtgctgaagcgcgcctacagcaaggaggccgacatctgCA
GAGGCCCCCACACGTCTCGGCGAATCCAGCAAGGCCAGGAACAGCAATCCTTGCGCAAGC
ACATTCGCTTTATCCGACACATTCGGCACATAACCTTTCGATTCGACAATGCTGTCGCGC
TGCCTGGGCATGGCCGGCACCACCCTTGGTGGTAGCCTGGCGTCTGGCGCGCAGTCTGCG
GTCAGCGGCATGTTCCGCGCCTCTGGTCGTCGAGCCACCAGTCTCCAGGTGCTCGCCTGG
CAGCTGCCCAACCTGTTTGCTGGCGACCAGCAGGCTCGCAACGCCGCATCCATCAAGGCC
AAGATGGCGGAGGCCAACAAGGCGCTGGAGAGCGACAAGATGCTGTGCTACCAGTGCGAG
CAGACCAAGAGCGGTACTGGCTGCACTGAGATCGGCGTGTGCGGCAAGACCCCCGAGGTC
GCTGGGCTGCAGGACCTGCTAGTGTACTCCGTCAAGGGCCTGGCCTCCCTGGCCCACATC
GCTCGCAACTCTCCCGCCAAAATCGAGGACCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002537A_C01 KCC002537A_c01
         (573 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_603581.1| Prismane protein [Fusobacterium nucleatum subsp...    77  2e-13
ref|ZP_00144608.1| Hydroxylamine reductase [Fusobacterium nuclea...    77  2e-13
ref|NP_228977.1| prismane protein [Thermotoga maritima] gi|73880...    70  2e-11
ref|NP_624272.1| 6Fe-6S prismane cluster-containing protein [The...    67  2e-10
sp|Q01770|HCP_DESDE Hydroxylamine reductase (Hybrid-cluster prot...    67  2e-10

>ref|NP_603581.1| Prismane protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586] gi|23821957|sp|Q8RFL1|HCP_FUSNN Hydroxylamine
           reductase (Hybrid-cluster protein) (HCP)
           gi|19714209|gb|AAL94880.1| Prismane protein
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 566

 Score = 77.0 bits (188), Expect = 2e-13
 Identities = 35/57 (61%), Positives = 44/57 (76%), Gaps = 1/57 (1%)
 Frame = +1

Query: 394 DKMLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIAR-NSPAK 561
           DKM CYQC++T  GTGCT IGVCGKT E +GLQDLL+Y+ KG+A+ + + R N  AK
Sbjct: 2   DKMFCYQCQETAKGTGCTSIGVCGKTSETSGLQDLLLYTEKGVAAYSTVFRKNGKAK 58

>ref|ZP_00144608.1| Hydroxylamine reductase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256] gi|27886573|gb|EAA23788.1| Hydroxylamine
           reductase [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 578

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 33/51 (64%), Positives = 41/51 (79%)
 Frame = +1

Query: 394 DKMLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIAR 546
           DKM CYQC++T  GTGCT IGVCGKT E +GLQDLL+Y+ KG+A+ + I R
Sbjct: 2   DKMFCYQCQETAKGTGCTSIGVCGKTSETSGLQDLLLYTEKGVAAYSAIFR 52

>ref|NP_228977.1| prismane protein [Thermotoga maritima]
           gi|7388023|sp|Q9X0Q4|HCP_THEMA Hydroxylamine reductase
           (Hybrid-cluster protein) (HCP) gi|7430816|pir||G72285
           hybrid cluster [4Fe-2S-3O] protein TM1172 [similarity] -
           Thermotoga maritima (strain MSB8)
           gi|4981721|gb|AAD36247.1|AE001774_4 prismane protein
           [Thermotoga maritima]
          Length = 431

 Score = 70.5 bits (171), Expect = 2e-11
 Identities = 30/50 (60%), Positives = 40/50 (80%)
 Frame = +1

Query: 397 KMLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIAR 546
           +M CYQC QT +GTGCTE GVCGK+P VA LQD LV+++KG+++  + AR
Sbjct: 2   QMFCYQCSQTANGTGCTEYGVCGKSPTVARLQDNLVFAIKGISAYYYHAR 51

>ref|NP_624272.1| 6Fe-6S prismane cluster-containing protein [Thermoanaerobacter
           tengcongensis] gi|23821956|sp|Q8R6M9|HCP_THETN
           Hydroxylamine reductase (Hybrid-cluster protein) (HCP)
           gi|20517779|gb|AAM25876.1| 6Fe-6S prismane
           cluster-containing protein [Thermoanaerobacter
           tengcongensis]
          Length = 549

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 29/50 (58%), Positives = 38/50 (76%)
 Frame = +1

Query: 397 KMLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIAR 546
           KM CYQC++    TGCT IGVCGKT +VA LQDLL++++KG++ L   AR
Sbjct: 2   KMFCYQCQEALKNTGCTTIGVCGKTADVANLQDLLIFTLKGISFLNLKAR 51

>sp|Q01770|HCP_DESDE Hydroxylamine reductase (Hybrid-cluster protein) (Prismane protein)
           (HCP) gi|97362|pir||S24389 hybrid cluster [4Fe-2S-3O]
           protein [validated] - Desulfovibrio desulfuricans
           gi|49286|emb|CAA78029.1| prismane protein [Desulfovibrio
           desulfuricans]
          Length = 545

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = +1

Query: 391 SDKMLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLA 534
           S+ M CYQC++T    GCT++GVCGK PE A LQD L+Y  KGL  +A
Sbjct: 2   SNAMFCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIA 49



EST assemble image


clone accession position
1 LCL053g10_r AV629183 1 475
2 LCL045h06_r AV628702 49 491
3 HCL053d01_r AV642527 67 573




Chlamydomonas reinhardtii
Kazusa DNA Research Institute