Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002535A_C01 KCC002535A_c01
(534 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00008038.1| COG2115: Xylose isomerase [Rhodobacter sphaer... 43 0.003
ref|ZP_00141855.1| COG3210: Large exoproteins involved in heme u... 41 0.009
ref|ZP_00141853.1| COG3210: Large exoproteins involved in heme u... 41 0.009
ref|ZP_00057315.1| COG0600: ABC-type nitrate/sulfonate/bicarbona... 40 0.015
ref|ZP_00090625.1| COG0296: 1,4-alpha-glucan branching enzyme [A... 40 0.015
>ref|ZP_00008038.1| COG2115: Xylose isomerase [Rhodobacter sphaeroides]
Length = 817
Score = 42.7 bits (99), Expect = 0.003
Identities = 31/87 (35%), Positives = 39/87 (44%)
Frame = -1
Query: 492 RGGLSRSHGTSAAVGGRDGSAGMSGRQVIDRDVGRGLGGARMRGDAHNAARGTARARRGR 313
R G R+ G A+ G SA ++ R+ RDVGRG RG R RR R
Sbjct: 43 RAGDPRAGGQGASAQGL--SAALADRRACGRDVGRGRDELARRGRTRLVGRAP---RRDR 97
Query: 312 ARAKLSVTSTDGCVR*GCAPSRRQRPL 232
A+ + G R GCA +R RPL
Sbjct: 98 PHARCDAAAGGGLGRLGCAAARAGRPL 124
>ref|ZP_00141855.1| COG3210: Large exoproteins involved in heme utilization or adhesion
[Pseudomonas aeruginosa UCBPP-PA14]
Length = 2260
Score = 41.2 bits (95), Expect = 0.009
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -3
Query: 532 ARPCRAPGSHPGSPRRPQPKPWHERGGWRPRRQRGHEREAGHRPGRR---AWPWRRSHAR 362
AR RA HP R+P +P G Q G + E G RPGRR PWR++ AR
Sbjct: 68 ARRPRAAQRHPAQRRQPGGQPRAGSEGEPGAGQPGRQPEGGDRPGRRRAPGQPWRQA-AR 126
Query: 361 RRAQCGARDSSGATRPRP 308
R G + G RP
Sbjct: 127 RGRTAGRGEQPGQPPGRP 144
Score = 31.2 bits (69), Expect = 8.9
Identities = 21/46 (45%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Frame = -3
Query: 514 PGSHPGSP-RRPQPK----PWHERGGWRPRRQRGHEREAGHRPGRR 392
PG PG P P P+ PW R WRP R+ ER AG PG R
Sbjct: 137 PGQPPGRPVAEPGPRRGQDPWRSRQPWRPGRR--SERAAG--PGCR 178
>ref|ZP_00141853.1| COG3210: Large exoproteins involved in heme utilization or adhesion
[Pseudomonas aeruginosa UCBPP-PA14]
Length = 2307
Score = 41.2 bits (95), Expect = 0.009
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -3
Query: 532 ARPCRAPGSHPGSPRRPQPKPWHERGGWRPRRQRGHEREAGHRPGRR---AWPWRRSHAR 362
AR RA HP R+P +P G Q G + E G RPGRR PWR++ AR
Sbjct: 115 ARRPRAAQRHPAQRRQPGGQPRAGSEGEPGAGQPGRQPEGGDRPGRRRAPGQPWRQA-AR 173
Query: 361 RRAQCGARDSSGATRPRP 308
R G + G RP
Sbjct: 174 RGRTAGRGEQPGQPPGRP 191
Score = 31.2 bits (69), Expect = 8.9
Identities = 21/46 (45%), Positives = 23/46 (49%), Gaps = 5/46 (10%)
Frame = -3
Query: 514 PGSHPGSP-RRPQPK----PWHERGGWRPRRQRGHEREAGHRPGRR 392
PG PG P P P+ PW R WRP R+ ER AG PG R
Sbjct: 184 PGQPPGRPVAEPGPRRGQDPWRSRQPWRPGRR--SERAAG--PGCR 225
>ref|ZP_00057315.1| COG0600: ABC-type nitrate/sulfonate/bicarbonate transport system,
permease component [Thermobifida fusca]
Length = 450
Score = 40.4 bits (93), Expect = 0.015
Identities = 34/100 (34%), Positives = 37/100 (37%), Gaps = 23/100 (23%)
Frame = -3
Query: 529 RPCRAPGSHPGSPRRPQPKPWHERGGWRP---RRQRGHEREAGHRPGRRAWPWRRSHARR 359
RP P +HPG RRP P H RP RR R A R G RA RSHA
Sbjct: 9 RPADRPNAHPGRQRRPHPPIRHPPAHHRPRHLRRSLAGSRTAPPRHGPRA---HRSHAAL 65
Query: 358 RAQCGARDSS--------------------GATRPRPRQA 299
G R S G RPRPR++
Sbjct: 66 LRPHGLRGPSPHGQPARRLHPLPRSRPQPVGGNRPRPRRS 105
>ref|ZP_00090625.1| COG0296: 1,4-alpha-glucan branching enzyme [Azotobacter vinelandii]
Length = 912
Score = 40.4 bits (93), Expect = 0.015
Identities = 32/87 (36%), Positives = 37/87 (41%), Gaps = 10/87 (11%)
Frame = -3
Query: 526 PCRAPGSHPGSPRRP--QPKPWHERGGWRPRRQRGHEREAG--HRPGRRAWPWRR----S 371
P + PG PG R P +P G WR R R H RPGRR RR +
Sbjct: 133 PAKGPGPDPGPRRHPGRTGRPTGRHGAWRTRAGRQHAATGRTFSRPGRRGHRLRRNHRAT 192
Query: 370 HARRRAQCGARDSSGATRPRP--RQAF 296
H RRR + A RP+P R AF
Sbjct: 193 HVRRRRLPPDALALRALRPQPDVRPAF 219
