KCC002510A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002510A_C01 KCC002510A_c01
atacttggcccgtgcctgtatcccctcgcatcatttgcaaggttgtgcgtcaaTCAATCG
CTGCGTGACGATGCTGGCCACGGCCGCAAGCAAGCTCGGCCTAACAGGCCTGGGCATTCA
GGCAATCAGTGCGGTCGGTAACTCGATTCGCCAGTTCTCGTCGACCGAGAACACCGACCT
GAAGCAGGCGCTTCGTGAGCTCATTCCGGCGCAGCAGGAGCGCCTGAAGGCCCTGAAGAA
GGGCCATGGCTCCAAGTCGCTGGGCGAGGTGACCGTGGATATGGCGATCGGCGGCATGCG
TGGCATCCCGGGCATGCTGTGGGAGACGTCGCTGCTGGACCCGGAGGAGGGCATTCGCTT
CCGTGGCCTGTCCATCCCCGAGCTGCAGGAGAAGCTGCCCGCGGCCGTCCCCGGCGGCCA
GCCCATCCCCGAGGGCCTGCTGTGGCTGCTGCTGACCGGCCAGGTGCCCACCAGCAGCCA
GGCTGCTGCTGTGACTGAGGAGCTGCGGGCCCGCAGCAACGTGCCGCTGCACCTGCGCAA
GGTGCTGGACGCGCTGCCCACGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCAT
GGCGCTGCAGTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCG
CTAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002510A_C01 KCC002510A_c01
         (664 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor g...   231  1e-59
emb|CAA59008.1| citrate synthase [Nicotiana tabacum]                  223  2e-57
gb|AAG28777.1|AF302906_1 citrate synthase [Oryza sativa]              223  2e-57
ref|NP_566016.1| citrate synthase [Arabidopsis thaliana] gi|2773...   219  3e-56
gb|AAM62868.1| citrate synthase [Arabidopsis thaliana]                219  3e-56

>sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor
           gi|3493367|dbj|BAA32557.1| citrate synthase [Daucus
           carota]
          Length = 472

 Score =  231 bits (588), Expect = 1e-59
 Identities = 111/182 (60%), Positives = 139/182 (75%), Gaps = 3/182 (1%)
 Frame = +2

Query: 128 SAVGNSIRQF---SSTENTDLKQALRELIPAQQERLKALKKGHGSKSLGEVTVDMAIGGM 298
           S + N++R F   +S  + DL+  L+ELIP QQER+K LK  HG   LG +TVDM +GGM
Sbjct: 21  SNLSNTVRWFQVQTSASDLDLRSQLKELIPEQQERIKKLKAEHGKVQLGNITVDMVLGGM 80

Query: 299 RGIPGMLWETSLLDPEEGIRFRGLSIPELQEKLPAAVPGGQPIPEGLLWLLLTGQVPTSS 478
           RG+ G+LWETSLLDPEEGIRFRGLSIPE Q+ LP A PGG+P+PEGLLWLLLTG+VPT  
Sbjct: 81  RGMTGLLWETSLLDPEEGIRFRGLSIPECQKLLPGAKPGGEPLPEGLLWLLLTGKVPTKE 140

Query: 479 QAAAVTEELRARSNVPLHLRKVLDALPTEAHPMTQLSMGIMALQSGSRFQSAYARGVHKS 658
           Q  A++ ELR+R+ VP H+ K +DALP  AHPMTQ + G+MALQ  S FQ AY +G+HK+
Sbjct: 141 QVDALSAELRSRAAVPEHVYKTIDALPVTAHPMTQFATGVMALQVQSEFQKAYEKGIHKT 200

Query: 659 RY 664
           +Y
Sbjct: 201 KY 202

>emb|CAA59008.1| citrate synthase [Nicotiana tabacum]
          Length = 469

 Score =  223 bits (569), Expect = 2e-57
 Identities = 107/178 (60%), Positives = 137/178 (76%), Gaps = 2/178 (1%)
 Frame = +2

Query: 134 VGNSIR--QFSSTENTDLKQALRELIPAQQERLKALKKGHGSKSLGEVTVDMAIGGMRGI 307
           + NS+R  Q  ++   DL+  L+ELIP QQ+RLK LK  HG   LG +TVDM +GGMRG+
Sbjct: 23  LSNSVRWLQVQTSSGLDLRSELQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGM 82

Query: 308 PGMLWETSLLDPEEGIRFRGLSIPELQEKLPAAVPGGQPIPEGLLWLLLTGQVPTSSQAA 487
            G+LWETSLLDP+EGIRFRGLSI E Q+ LPAA PGG+P+PEGLLWLLLTG+VP+  Q  
Sbjct: 83  TGLLWETSLLDPDEGIRFRGLSIYECQKVLPAAKPGGEPLPEGLLWLLLTGKVPSKEQVD 142

Query: 488 AVTEELRARSNVPLHLRKVLDALPTEAHPMTQLSMGIMALQSGSRFQSAYARGVHKSR 661
           ++++ELR+R+ VP H+ K +DALP  AHPMTQ + G+MALQ  S FQ AY +G+HKS+
Sbjct: 143 SLSQELRSRATVPDHVYKTIDALPVTAHPMTQFATGVMALQVQSEFQKAYEKGIHKSK 200

>gb|AAG28777.1|AF302906_1 citrate synthase [Oryza sativa]
          Length = 472

 Score =  223 bits (569), Expect = 2e-57
 Identities = 114/209 (54%), Positives = 148/209 (70%)
 Frame = +2

Query: 38  QGCASINRCVTMLATAASKLGLTGLGIQAISAVGNSIRQFSSTENTDLKQALRELIPAQQ 217
           +G  +++R  + +A  A+ LG    G++ +        Q  S  + DLK  L+ELIP QQ
Sbjct: 5   RGLTAVSRLRSRVAQEATTLG----GVRWL--------QMQSASDLDLKSQLQELIPEQQ 52

Query: 218 ERLKALKKGHGSKSLGEVTVDMAIGGMRGIPGMLWETSLLDPEEGIRFRGLSIPELQEKL 397
           +RLK LK  HG   LG +TVDM +GGMRG+ GMLWETSLLDP+EGIRFRGLSIPE Q+ L
Sbjct: 53  DRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVL 112

Query: 398 PAAVPGGQPIPEGLLWLLLTGQVPTSSQAAAVTEELRARSNVPLHLRKVLDALPTEAHPM 577
           P AV  G+P+PEGLLWLLLTG+VPT  Q  A+++EL +RS+VP H+ K +DALP  AHPM
Sbjct: 113 PTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSSVPGHVYKAIDALPVTAHPM 172

Query: 578 TQLSMGIMALQSGSRFQSAYARGVHKSRY 664
           TQ + G+MALQ  S FQ AY +G+ KS++
Sbjct: 173 TQFTTGVMALQVESEFQKAYDKGMSKSKF 201

>ref|NP_566016.1| citrate synthase [Arabidopsis thaliana]
           gi|27735166|sp|P20115|CISY_ARATH Citrate synthase,
           mitochondrial precursor
           gi|14423562|gb|AAK62463.1|AF387018_1 citrate synthase
           [Arabidopsis thaliana] gi|20197191|gb|AAC16084.2|
           citrate synthase [Arabidopsis thaliana]
           gi|30387583|gb|AAP31957.1| At2g44350 [Arabidopsis
           thaliana]
          Length = 473

 Score =  219 bits (558), Expect = 3e-56
 Identities = 107/181 (59%), Positives = 136/181 (75%), Gaps = 2/181 (1%)
 Frame = +2

Query: 128 SAVGNSIR--QFSSTENTDLKQALRELIPAQQERLKALKKGHGSKSLGEVTVDMAIGGMR 301
           S++ NS+R  Q  S+ + DLK  L+ELIP QQ+RLK LK  HG   LG +TVDM IGGMR
Sbjct: 21  SSLSNSVRWIQMQSSTDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVIGGMR 80

Query: 302 GIPGMLWETSLLDPEEGIRFRGLSIPELQEKLPAAVPGGQPIPEGLLWLLLTGQVPTSSQ 481
           G+ G+LWETSLLDPEEGIRFRGLSIPE Q+ LP A  G +P+PEGLLWLLLTG+VP+  Q
Sbjct: 81  GMTGLLWETSLLDPEEGIRFRGLSIPECQKVLPTAQSGAEPLPEGLLWLLLTGKVPSKEQ 140

Query: 482 AAAVTEELRARSNVPLHLRKVLDALPTEAHPMTQLSMGIMALQSGSRFQSAYARGVHKSR 661
             A++++L  R+ VP ++   +DALP+ AHPMTQ + G+MALQ  S FQ AY  G+HKS+
Sbjct: 141 VEALSKDLANRAAVPDYVYNAIDALPSTAHPMTQFASGVMALQVQSEFQKAYENGIHKSK 200

Query: 662 Y 664
           +
Sbjct: 201 F 201

>gb|AAM62868.1| citrate synthase [Arabidopsis thaliana]
          Length = 473

 Score =  219 bits (558), Expect = 3e-56
 Identities = 107/181 (59%), Positives = 136/181 (75%), Gaps = 2/181 (1%)
 Frame = +2

Query: 128 SAVGNSIR--QFSSTENTDLKQALRELIPAQQERLKALKKGHGSKSLGEVTVDMAIGGMR 301
           S++ NS+R  Q  S+ + DLK  L+ELIP QQ+RLK LK  HG   LG +TVDM IGGMR
Sbjct: 21  SSLNNSVRWIQMQSSTDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVIGGMR 80

Query: 302 GIPGMLWETSLLDPEEGIRFRGLSIPELQEKLPAAVPGGQPIPEGLLWLLLTGQVPTSSQ 481
           G+ G+LWETSLLDPEEGIRFRGLSIPE Q+ LP A  G +P+PEGLLWLLLTG+VP+  Q
Sbjct: 81  GMTGLLWETSLLDPEEGIRFRGLSIPECQKVLPTAQSGAEPLPEGLLWLLLTGKVPSKEQ 140

Query: 482 AAAVTEELRARSNVPLHLRKVLDALPTEAHPMTQLSMGIMALQSGSRFQSAYARGVHKSR 661
             A++++L  R+ VP ++   +DALP+ AHPMTQ + G+MALQ  S FQ AY  G+HKS+
Sbjct: 141 VEALSKDLANRAAVPDYVYNAIDALPSTAHPMTQFASGVMALQVQSEFQKAYENGIHKSK 200

Query: 662 Y 664
           +
Sbjct: 201 F 201



EST assemble image


clone accession position
1 HCL048e04_r AV642257 1 228
2 HCL098e03_r AV645120 54 520
3 LCL046d07_r AV628738 185 664




Chlamydomonas reinhardtii
Kazusa DNA Research Institute