KCC002506A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002506A_C01 KCC002506A_c01
cacgaattgcaacaaacgaaCAAAGCTCGTTTACTGCAACGCTCGCTTAAACGGCAAAGT
CAGCCTGTGAAGTGACGCTTTCGTGCGCCCCCTCACCGATACCAATACCACGCTTTAACT
AACATAGGCAAGCTGGCTCAGGCGGAGGACAGGGCACAAGCCCAATGGCCAACCTTGCCA
CCAGCTCTTTTCGGTGGAGCGGAGATTGATAAAGACTTCGAGAAAATGGCGATGCAGCTG
CTGGACATGAAACCAGAGCCAGCCGACATGACTATGGCTGAGACTGAAGCGGATGCAGTC
CCGAGCCCACTCGCACAGGCCATCGCGCAAGCCAGCGCACAGGGCCGCCGGCGAAAGACG
TCAACACGAAAGAAGCCTCTCAGGCCCCAGCAGCAGGCGCTCGTGGACATGGAAGATAAG
CTAGCCGAGCTTCTGCAGGTATACCAGACCGCAGTCCAGGAGAACACGCGCCTCAnAGCA
CGGATACGCGTCATCGAGGCGGTGCTGCCGCAGCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002506A_C01 KCC002506A_c01
         (517 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK55108.1| keratin protein K6irs [Homo sapiens]                    39  0.039
ref|NP_542785.1| keratin protein K6irs [Homo sapiens] gi|1803172...    39  0.039
gb|AAG09737.1|AF228582_1 fructosyltransferase [Actinomyces naesl...    37  0.19
ref|XP_308408.1| ENSANGP00000019113 [Anopheles gambiae] gi|21292...    35  0.43
gb|AAH55467.1| Unknown (protein for IMAGE:4010680) [Mus musculus]      35  0.74

>gb|AAK55108.1| keratin protein K6irs [Homo sapiens]
          Length = 510

 Score = 38.9 bits (89), Expect = 0.039
 Identities = 23/55 (41%), Positives = 35/55 (62%), Gaps = 1/55 (1%)
 Frame = -3

Query: 329 CAMACASGLGTASASVSAIVM-SAGSGFMSSSCIAIFSKSLSISAPPKRAGGKVG 168
           C+   + G+G++SAS  A V  SA  G  S SC+   S+SL++SA  +R GG++G
Sbjct: 19  CSAVLSGGIGSSSASFRARVKGSASFGSKSLSCLG-GSRSLALSAAARRGGGRLG 72

>ref|NP_542785.1| keratin protein K6irs [Homo sapiens] gi|18031722|gb|AAK55109.1|
           keratin protein K6irs [Homo sapiens]
          Length = 511

 Score = 38.9 bits (89), Expect = 0.039
 Identities = 23/55 (41%), Positives = 35/55 (62%), Gaps = 1/55 (1%)
 Frame = -3

Query: 329 CAMACASGLGTASASVSAIVM-SAGSGFMSSSCIAIFSKSLSISAPPKRAGGKVG 168
           C+   + G+G++SAS  A V  SA  G  S SC+   S+SL++SA  +R GG++G
Sbjct: 19  CSAVLSGGIGSSSASFRARVKGSASFGSKSLSCLG-GSRSLALSAAARRGGGRLG 72

>gb|AAG09737.1|AF228582_1 fructosyltransferase [Actinomyces naeslundii]
          Length = 630

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 22/68 (32%), Positives = 36/68 (52%)
 Frame = +1

Query: 106 YHALTNIGKLAQAEDRAQAQWPTLPPALFGGAEIDKDFEKMAMQLLDMKPEPADMTMAET 285
           Y+ L N+G LA+A+++A  +W  LPP L G   ++   E+  +   D K     ++  ET
Sbjct: 432 YYQLANVG-LARAKNKAMTEWEYLPPLLSGNC-VNDQTERPQIYFQDGKYYLFTISHRET 489

Query: 286 EADAVPSP 309
            AD +  P
Sbjct: 490 YADGLQGP 497

>ref|XP_308408.1| ENSANGP00000019113 [Anopheles gambiae] gi|21292395|gb|EAA04540.1|
           ENSANGP00000019113 [Anopheles gambiae str. PEST]
          Length = 560

 Score = 35.4 bits (80), Expect = 0.43
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 27/157 (17%)
 Frame = +1

Query: 124 IGKLAQAEDRAQAQWPTLPPALFGGAEIDKDFEKMAMQLLDMKPEPADMTMAET-----E 288
           +G +AQ +D  + +   L  AL        D E   ++ L+ + E A + + ++     E
Sbjct: 387 MGSVAQDQDEIKRELVRLRHAL--------DTETAQLERLEERIERAVVELGQSIDELRE 438

Query: 289 ADAVPSPLAQAIAQ-----------ASAQGRRRK-------TSTRKKPLRPQQQALVDME 414
               P P   A+ Q            S +  RRK       TS R K +R   + +  +E
Sbjct: 439 RAVRPKPTLDAVRQQTIGDSIERIKTSIESLRRKVQNYVYETSERDKRIRRYGERIDHLE 498

Query: 415 DKLAELLQVYQTAVQENTRLXARI----RVIEAVLPQ 513
           D+LAE  Q+  +  +    L AR+    RVIE V+P+
Sbjct: 499 DQLAEAQQLENSLHRRAGDLTARVDDAYRVIEEVIPR 535

>gb|AAH55467.1| Unknown (protein for IMAGE:4010680) [Mus musculus]
          Length = 363

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 300 PEPTRTGHRASQRTGPPA---KDVNTKEASQAPAAGARGHGR*ASRASAGIPDRSPGEHA 470
           P+ TR GHR SQR   P+     + T++ S  P   +R   R    A+AG+P +      
Sbjct: 256 PKSTRHGHRTSQRQRSPSGPRASLPTRDTSSGPTKASRHSPR---SAAAGLPGKERSTST 312

Query: 471 PXS 479
           P S
Sbjct: 313 PSS 315



EST assemble image


clone accession position
1 LCL027c01_r AV627468 1 517
2 HCL048a10_r AV642236 17 287
3 LCL088a06_r AV631042 152 424




Chlamydomonas reinhardtii
Kazusa DNA Research Institute