KCC002495A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002495A_C01 KCC002495A_c01
gccgcggatgatgcttaagaagagccgcattttggcatgcggtggcaactgcgctttttt
agcgaaggggccgcaacgtgAGCGCGCAACACATACGACTTGCACATTTCTTGCTACACC
CGGCGTCGCTTGGCGATCTGCCTTCAAACTTTGAAACGCGAACAGCCGATTGGGTCCTTC
TACCTTGTCGAGGGTTGATGCGTAGTATTGGATCGGAACGATTGCTTGGTCACAGACGTA
TGAATCTCTAGCAACGTCAAACCGCGCCTTCGGGGCGCCCACTTGCCGGCCGGCACGTTT
TCGCGTCAAGGCGCTGAAATGTCGAGTTCCTCCCACTTCATCACGCGCGGTGGCTGTGCT
AGCAGTGGATGTCTACTGCAGCAGCAGAAGGATGTGACACACCGTGTGGACCCCAGCGCC
GTCGAGGATCAATGCGCGAGCTTCCACTTGGGCAGCACAGCGCGGGCTTTCTCAAGAAGG
AGCGTGTGCCGTATTCGGGTATCTCCCTCGATGACCTGGAAACGAGCCCAGCTCTGCGCG
GCGGACCGTCGGAGCGCTGCGACGGACTGGTCGGTTGCACCTGAGGAGTACCCAGCGCGC
CCCACCTCACGCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002495A_C01 KCC002495A_c01
         (615 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00089480.1| COG0451: Nucleoside-diphosphate-sugar epimera...    33  3.3
gb|AAF01690.1|AF181452_1 dehydrin; Dhn2 [Hordeum vulgare]              33  4.3
sp|P12952|DH2_HORVU DEHYDRIN DHN2 (B9) gi|82390|pir||S05543 dehy...    33  4.3
gb|AAB36375.1| tyrosinase [Gallus gallus]                              33  4.3
sp|P55024|TYRO_CHICK Tyrosinase precursor (Monophenol monooxygen...    33  4.3

>ref|ZP_00089480.1| COG0451: Nucleoside-diphosphate-sugar epimerases [Azotobacter
           vinelandii]
          Length = 546

 Score = 33.1 bits (74), Expect = 3.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 605 VGRAGYSSGATDQSVAALRRSAAQSWARFQVIEGDTRIRH 486
           VG   +S+G         +R++A  WARFQ+I GD R  H
Sbjct: 222 VGLDNFSTGHPHNLEEVRQRTSAPRWARFQLIRGDIRELH 261

>gb|AAF01690.1|AF181452_1 dehydrin; Dhn2 [Hordeum vulgare]
          Length = 141

 Score = 32.7 bits (73), Expect = 4.3
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -3

Query: 598 ALGTPQVQPTSPSQRSDGPPRRAGLVSRSSREIPEYGTR 482
           A GT Q+QPT    ++DG  RR+G  S SS E    G R
Sbjct: 40  AAGTGQLQPTRDDHKTDGVLRRSGSSSSSSSEDDGVGGR 78

>sp|P12952|DH2_HORVU DEHYDRIN DHN2 (B9) gi|82390|pir||S05543 dehydrin 9 - barley
           gi|18968|emb|CAA33363.1| dehydrin [Hordeum vulgare
           subsp. vulgare]
          Length = 143

 Score = 32.7 bits (73), Expect = 4.3
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -3

Query: 598 ALGTPQVQPTSPSQRSDGPPRRAGLVSRSSREIPEYGTR 482
           A GT Q+QPT    ++DG  RR+G  S SS E    G R
Sbjct: 42  AAGTGQLQPTRDDHKTDGVLRRSGSSSSSSSEDDGVGGR 80

>gb|AAB36375.1| tyrosinase [Gallus gallus]
          Length = 529

 Score = 32.7 bits (73), Expect = 4.3
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 387 EGCDTPCGPQRRRGSMRELPLGQHSAGFLKKERVPYSGISLDDLETSPALRGGPSERCDG 566
           +G  TPCG +  RG+ + + L Q   G     + P+SG+  DD E  P++    + RC G
Sbjct: 40  DGDGTPCGERSNRGTCQRILLSQAPLG----PQFPFSGV--DDREDWPSVFYNRTCRCRG 93

>sp|P55024|TYRO_CHICK Tyrosinase precursor (Monophenol monooxygenase)
           gi|1655469|dbj|BAA13590.1| tyrosinase [Gallus gallus]
          Length = 529

 Score = 32.7 bits (73), Expect = 4.3
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 387 EGCDTPCGPQRRRGSMRELPLGQHSAGFLKKERVPYSGISLDDLETSPALRGGPSERCDG 566
           +G  TPCG +  RG+ + + L Q   G     + P+SG+  DD E  P++    + RC G
Sbjct: 40  DGDGTPCGERSNRGTCQRILLSQAPLG----PQFPFSGV--DDREDWPSVFYNRTCRCRG 93



EST assemble image


clone accession position
1 HCL046b09_r AV642133 1 442
2 LCL039g09_r AV628303 97 615
3 MXL048c02_r BP095843 216 598




Chlamydomonas reinhardtii
Kazusa DNA Research Institute