KCC002480A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002480A_C01 KCC002480A_c01
gcaataggcACACTACCTTACCTTGGCCTGCAGTCAGTAGGCGGCCCTCACCCGGAACTG
GAAGAAGACACGGTGAATGGAGCGCATTCTTTCTACGGCTCAAGCATGTATTTCAGGCTA
CGATGTTGCCTTTTCTAGAGCCGTACGCCTAGAGGACCGGGCTTGGCGCGGGGAGGACCT
TGCGCACCGAGAGCTGGAGCGGCAACTGCTGCACGAGGAGGCAAAGTTCATGCAGGAGGA
GCGCCGGTTCCTGCACACGCAGATCCAGCAAGCGCATGTGGAGAACGCCAGGTCGCTGTG
GCTCAGATTCGTGGACCGCAACCGCACGGAGGTCATGGAGAAGACGGAGCAGCTCAAGGC
GGTCAGCAGCCTGTCCGCCCTCCTGGCTGGCTTTGCTCTTGTGGGGTTCCTAGAGTTCCA
GTTTGTGGTCAGCGAGAATTACAACAAGGCGCTGCTGCCCCTCTTCGCGTTGACCACCAG
CATAACGGTCGGGGTGGAGGTGGCCGCGGTGGTGCTGACTTCGCTCATGCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002480A_C01 KCC002480A_c01
         (532 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_824267.1| hypothetical protein [Streptomyces avermitilis ...    45  4e-04
gb|AAH23149.1| D730049H07Rik protein [Mus musculus]                    45  6e-04
ref|XP_222178.2| similar to hypothetical protein FLJ14466 [Rattu...    45  6e-04
dbj|BAC39533.1| unnamed protein product [Mus musculus]                 45  6e-04
ref|XP_132314.2| RIKEN cDNA D730049H07 [Mus musculus] gi|3042513...    45  6e-04

>ref|NP_824267.1| hypothetical protein [Streptomyces avermitilis MA-4680]
           gi|29606741|dbj|BAC70802.1| hypothetical protein
           [Streptomyces avermitilis MA-4680]
          Length = 516

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 37/95 (38%), Positives = 39/95 (40%), Gaps = 5/95 (5%)
 Frame = +1

Query: 166 ARGGPCAPRAGAATAARGGKVHAGGAPVPAHADPASACGERQVAVAQIRG--PQ---PHG 330
           ARG P  PR    T ARG      G P  AH  P    G       Q+RG  PQ   P G
Sbjct: 87  ARGVPAGPRLPDGTPARGVPRFLDGTP--AHGTPRPFDGTPAHGTPQVRGGHPQQREPGG 144

Query: 331 GHGEDGAAQGGQQPVRPPGWLCSCGVPRVPVCGQR 435
           G GE G    G     PPG       PR+P  GQR
Sbjct: 145 GWGESGGVPAGAPKAAPPG-------PRLP--GQR 170

>gb|AAH23149.1| D730049H07Rik protein [Mus musculus]
          Length = 239

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 23/61 (37%), Positives = 39/61 (63%)
 Frame = +2

Query: 350 QLKAVSSLSALLAGFALVGFLEFQFVVSENYNKALLPLFALTTSITVGVEVAAVVLTSLM 529
           +LKA S  SALL+GFA+V  +E Q     +Y   LL +F+  T++ V V + A+++++ +
Sbjct: 22  KLKASSRTSALLSGFAMVAMVEVQLDTDHDYPPGLLIVFSACTTVLVAVHLFALMISTCI 81

Query: 530 L 532
           L
Sbjct: 82  L 82

>ref|XP_222178.2| similar to hypothetical protein FLJ14466 [Rattus norvegicus]
          Length = 319

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 23/61 (37%), Positives = 39/61 (63%)
 Frame = +2

Query: 350 QLKAVSSLSALLAGFALVGFLEFQFVVSENYNKALLPLFALTTSITVGVEVAAVVLTSLM 529
           +LKA S  SALL+GFA+V  +E Q     +Y   LL +F+  T++ V V + A+++++ +
Sbjct: 101 KLKASSRTSALLSGFAMVAMVEVQLDTDHDYPPGLLIVFSACTTVLVAVHLFALMISTCI 160

Query: 530 L 532
           L
Sbjct: 161 L 161

>dbj|BAC39533.1| unnamed protein product [Mus musculus]
          Length = 282

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 23/61 (37%), Positives = 39/61 (63%)
 Frame = +2

Query: 350 QLKAVSSLSALLAGFALVGFLEFQFVVSENYNKALLPLFALTTSITVGVEVAAVVLTSLM 529
           +LKA S  SALL+GFA+V  +E Q     +Y   LL +F+  T++ V V + A+++++ +
Sbjct: 65  KLKASSRTSALLSGFAMVAMVEVQLDTDHDYPPGLLIVFSACTTVLVAVHLFALMISTCI 124

Query: 530 L 532
           L
Sbjct: 125 L 125

>ref|XP_132314.2| RIKEN cDNA D730049H07 [Mus musculus] gi|30425136|ref|NP_780632.1|
           RIKEN cDNA D730049H07 [Mus musculus]
           gi|26342777|dbj|BAC35045.1| unnamed protein product [Mus
           musculus]
          Length = 304

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 23/61 (37%), Positives = 39/61 (63%)
 Frame = +2

Query: 350 QLKAVSSLSALLAGFALVGFLEFQFVVSENYNKALLPLFALTTSITVGVEVAAVVLTSLM 529
           +LKA S  SALL+GFA+V  +E Q     +Y   LL +F+  T++ V V + A+++++ +
Sbjct: 87  KLKASSRTSALLSGFAMVAMVEVQLDTDHDYPPGLLIVFSACTTVLVAVHLFALMISTCI 146

Query: 530 L 532
           L
Sbjct: 147 L 147



EST assemble image


clone accession position
1 HCL043f03_r AV641996 1 532
2 LCL022f07_r AV627204 10 532




Chlamydomonas reinhardtii
Kazusa DNA Research Institute